* using log directory ‘/data/gannet/ripley/R/packages/tests-CXX20-clang/BayesXsrc.Rcheck’
* using R Under development (unstable) (2026-01-14 r89302)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    clang version 21.1.8
    flang version 21.1.8
* running under: Fedora Linux 42 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘BayesXsrc/DESCRIPTION’ ... OK
* this is package ‘BayesXsrc’ version ‘3.0-7’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘BayesXsrc’ can be installed ... [16m/16m] WARNING
Found the following significant warnings:
  bayesxsrc/bib/data.cpp:939:36: warning: ISO C++20 requires return type of selected 'operator==' function for rewritten '!=' comparison to be 'bool', not 'int' [-Wrewrite-not-bool]
  bayesxsrc/bib/data.cpp:939:36: warning: ISO C++20 considers use of overloaded operator '!=' (with operand types 'value_type' (aka 'realob::realobs') and 'realobs') to be ambiguous despite there being a unique best viable function [-Wambiguous-reversed-operator]
  bayesxsrc/bib/data.cpp:1385:16: warning: ISO C++20 considers use of overloaded operator '==' (with operand types 'realobs' and 'realobs') to be ambiguous despite there being a unique best viable function [-Wambiguous-reversed-operator]
  bayesxsrc/bib/data.cpp:1578:16: warning: ISO C++20 considers use of overloaded operator '==' (with operand types 'realobs' and 'realobs') to be ambiguous despite there being a unique best viable function [-Wambiguous-reversed-operator]
  bayesxsrc/bib/data.cpp:1596:20: warning: ISO C++20 considers use of overloaded operator '==' (with operand types 'realobs' and 'realobs') to be ambiguous despite there being a unique best viable function [-Wambiguous-reversed-operator]
  bayesxsrc/bib/data.cpp:1656:16: warning: ISO C++20 considers use of overloaded operator '==' (with operand types 'realobs' and 'realobs') to be ambiguous despite there being a unique best viable function [-Wambiguous-reversed-operator]
  bayesxsrc/bib/data.cpp:1674:20: warning: ISO C++20 considers use of overloaded operator '==' (with operand types 'realobs' and 'realobs') to be ambiguous despite there being a unique best viable function [-Wambiguous-reversed-operator]
  bayesxsrc/bib/vectorn.cpp:276:18: warning: ISO C++20 considers use of overloaded operator '==' (with operand types 'realob::realobs' and 'realob::realobs') to be ambiguous despite there being a unique best viable function [-Wambiguous-reversed-operator]
  bayesxsrc/bib/vectorn.cpp:314:18: warning: ISO C++20 requires return type of selected 'operator==' function for rewritten '!=' comparison to be 'bool', not 'int' [-Wrewrite-not-bool]
  bayesxsrc/bib/vectorn.cpp:314:18: warning: ISO C++20 considers use of overloaded operator '!=' (with operand types 'realob::realobs' and 'realob::realobs') to be ambiguous despite there being a unique best viable function [-Wambiguous-reversed-operator]
  bayesxsrc/bib/realvar.cpp:195:25: warning: ISO C++20 considers use of overloaded operator '==' (with operand types 'value_type' (aka 'realob::realobs') and 'realobs') to be ambiguous despite there being a unique best viable function [-Wambiguous-reversed-operator]
  bayesxsrc/bib/realvar.cpp:205:25: warning: ISO C++20 considers use of overloaded operator '==' (with operand types 'value_type' (aka 'realob::realobs') and 'realobs') to be ambiguous despite there being a unique best viable function [-Wambiguous-reversed-operator]
  bayesxsrc/dag/adjacency.cpp:832:26: warning: ISO C++20 considers use of overloaded operator '==' (with operand types 'Matrix<unsigned int>' and 'Matrix<unsigned int>') to be ambiguous despite there being a unique best viable function [-Wambiguous-reversed-operator]
  bayesxsrc/psplines/fullcond_pspline_stepwise.cpp:485:35: warning: ISO C++20 considers use of overloaded operator '==' (with operand types 'datamatrix' (aka 'statmatrix<double>') and 'datamatrix') to be ambiguous despite there being a unique best viable function [-Wambiguous-reversed-operator]
See ‘/data/gannet/ripley/R/packages/tests-CXX20-clang/BayesXsrc.Rcheck/00install.out’ for details.
* checking installed package size ... INFO
  installed size is 11.4Mb
  sub-directories of 1Mb or more:
    libs  11.2Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for GNU extensions in Makefiles ... INFO
GNU make is a SystemRequirements.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking include directives in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘mcmc.R’ [13s/13s]
  Running ‘reml.R’
  Running ‘step.R’
  Running ‘zfileremoves.R’
 [15s/15s] OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 WARNING
See
  ‘/data/gannet/ripley/R/packages/tests-CXX20-clang/BayesXsrc.Rcheck/00check.log’
for details.

Time 16:11.71, 974.72 + 44.45