* using log directory ‘/data/gannet/ripley/R/packages/tests-devel2/stopdetection.Rcheck’
* using R Under development (unstable) (2025-01-08 r87545)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-14 (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: Fedora Linux 36 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘stopdetection/DESCRIPTION’ ... OK
* this is package ‘stopdetection’ version ‘0.1.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘stopdetection’ can be installed ... [4s/11s] OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [5s/13s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [5s/10s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’/data/gannet/ripley/R/R-devel2/bin/BATCH: line 60: 2403453 Segmentation fault      (core dumped) ${R_HOME}/bin/R -f ${in} ${opts} ${R_BATCH_OPTIONS} > ${out} 2>&1
 [3s/10s]
 [3s/12s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  > library(stopdetection)
  > 
  > test_check("stopdetection")
  
   *** caught segfault ***
  address 0x1, cause 'memory not mapped'
  
  Traceback:
   1: matrix(.Call("R_haversine_seq_vec", x, y))
   2: geodist_seq_vec(x1, y1, measure, pad)
   3: geodist_vec(longitude, latitude, sequential = TRUE, measure = "haversine")
   4: `[.data.table`(res, (move_idx), `:=`(raw_travel_dist, sum(geodist_vec(longitude,     latitude, sequential = TRUE, measure = "haversine"))), move_id)
   5: res[(move_idx), `:=`(raw_travel_dist, sum(geodist_vec(longitude,     latitude, sequential = TRUE, measure = "haversine"))), move_id]
   6: returnStateEvents(stopFinder(data.table::copy(df), thetaD = 1000,     thetaT = 200))
   7: eval_bare(expr, quo_get_env(quo))
   8: quasi_label(enquo(object), label, arg = "object")
   9: testthat::expect_equal(returnStateEvents(stopFinder(data.table::copy(df),     thetaD = 1000, thetaT = 200))$state_id, 1)
  10: eval(code, test_env)
  11: eval(code, test_env)
  12: withCallingHandlers({    eval(code, test_env)    if (!handled && !is.null(test)) {        skip_empty()    }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,     message = handle_message, error = handle_error)
  13: doTryCatch(return(expr), name, parentenv, handler)
  14: tryCatchOne(expr, names, parentenv, handlers[[1L]])
  15: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
  16: doTryCatch(return(expr), name, parentenv, handler)
  17: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]),     names[nh], parentenv, handlers[[nh]])
  18: tryCatchList(expr, classes, parentenv, handlers)
  19: tryCatch(withCallingHandlers({    eval(code, test_env)    if (!handled && !is.null(test)) {        skip_empty()    }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,     message = handle_message, error = handle_error), error = handle_fatal,     skip = function(e) {    })
  20: test_code(desc, code, env = parent.frame(), reporter = reporter)
  21: test_that("events are returned when there are no moves", {    testthat::expect_equal(returnStateEvents(stopFinder(data.table::copy(df),         thetaD = 1000, thetaT = 200))$state_id, 1)})
  22: eval(code, test_env)
  23: eval(code, test_env)
  24: withCallingHandlers({    eval(code, test_env)    if (!handled && !is.null(test)) {        skip_empty()    }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,     message = handle_message, error = handle_error)
  25: doTryCatch(return(expr), name, parentenv, handler)
  26: tryCatchOne(expr, names, parentenv, handlers[[1L]])
  27: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
  28: doTryCatch(return(expr), name, parentenv, handler)
  29: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]),     names[nh], parentenv, handlers[[nh]])
  30: tryCatchList(expr, classes, parentenv, handlers)
  31: tryCatch(withCallingHandlers({    eval(code, test_env)    if (!handled && !is.null(test)) {        skip_empty()    }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,     message = handle_message, error = handle_error), error = handle_fatal,     skip = function(e) {    })
  32: test_code(test = NULL, code = exprs, env = env, reporter = get_reporter() %||%     StopReporter$new())
  33: source_file(path, env = env(env), desc = desc, error_call = error_call)
  34: FUN(X[[i]], ...)
  35: lapply(test_paths, test_one_file, env = env, desc = desc, error_call = error_call)
  36: doTryCatch(return(expr), name, parentenv, handler)
  37: tryCatchOne(expr, names, parentenv, handlers[[1L]])
  38: tryCatchList(expr, classes, parentenv, handlers)
  39: tryCatch(code, testthat_abort_reporter = function(cnd) {    cat(conditionMessage(cnd), "\n")    NULL})
  40: with_reporter(reporters$multi, lapply(test_paths, test_one_file,     env = env, desc = desc, error_call = error_call))
  41: test_files_serial(test_dir = test_dir, test_package = test_package,     test_paths = test_paths, load_helpers = load_helpers, reporter = reporter,     env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning,     desc = desc, load_package = load_package, error_call = error_call)
  42: test_files(test_dir = path, test_paths = test_paths, test_package = package,     reporter = reporter, load_helpers = load_helpers, env = env,     stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning,     load_package = load_package, parallel = parallel)
  43: test_dir("testthat", package = package, reporter = reporter,     ..., load_package = "installed")
  44: test_check("stopdetection")
  An irrecoverable exception occurred. R is aborting now ...
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [23s/45s] OK
* checking PDF version of manual ... [7s/12s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/gannet/ripley/R/packages/tests-devel2/stopdetection.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 2:49.14, 63.48 + 11.69