* using log directory ‘/data/gannet/ripley/R/packages/tests-devel2/EmbedSOM.Rcheck’
* using R Under development (unstable) (2025-01-08 r87545)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-14 (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: Fedora Linux 36 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘EmbedSOM/DESCRIPTION’ ... OK
* this is package ‘EmbedSOM’ version ‘2.1.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘EmbedSOM’ can be installed ... [54s/122s] OK
* used C++ compiler: ‘g++-14 (GCC) 14.2.0’
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘Matrix’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [7s/11s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [10s/17s] ERROR
Running examples in ‘EmbedSOM-Ex.R’ failed
The error most likely occurred in:

> ### Name: RandomMap
> ### Title: Create a map by randomly selecting points
> ### Aliases: RandomMap
> 
> ### ** Examples
> 
> d <- iris[,1:4]
> EmbedSOM::PlotEmbed(
+   EmbedSOM::EmbedSOM(
+     data = d,
+     map = EmbedSOM::RandomMap(d, 30, EmbedSOM::GraphCoords())),
+   pch=19, clust=iris[,5]
+ )

 *** caught segfault ***
address 0x1, cause 'memory not mapped'

Traceback:
 1: EmbedSOM::EmbedSOM(data = d, map = EmbedSOM::RandomMap(d, 30,     EmbedSOM::GraphCoords()))
 2: EmbedSOM::PlotEmbed(EmbedSOM::EmbedSOM(data = d, map = EmbedSOM::RandomMap(d,     30, EmbedSOM::GraphCoords())), pch = 19, clust = iris[, 5])
An irrecoverable exception occurred. R is aborting now ...
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [51s/76s] OK
* checking PDF version of manual ... [9s/14s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR, 1 NOTE
See
  ‘/data/gannet/ripley/R/packages/tests-devel2/EmbedSOM.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 4:49.40, 143.58 + 13.89