* using log directory ‘/data/gannet/ripley/R/packages/tests-devel3/fedmatch.Rcheck’
* using R Under development (unstable) (2024-11-30 r87408)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-14 (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: Fedora Linux 36 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘fedmatch/DESCRIPTION’ ... OK
* this is package ‘fedmatch’ version ‘2.0.6’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘fedmatch’ can be installed ... [34s/61s] OK
* used C++ compiler: ‘g++-14 (GCC) 14.2.0’
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [11s/28s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [9s/23s]
 [10s/25s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(fedmatch)
  > 
  > test_check("fedmatch")
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 30 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-scoring.R:7:3'): scoring works at all ──────────────────────────
  Error in `as.integer(nthread)`: cannot coerce type 'NULL' to vector of type 'integer'
  Backtrace:
      ▆
   1. └─fedmatch::merge_plus(...) at test-scoring.R:7:3
   2.   └─fedmatch:::fuzzy_match(...)
   3.     ├─base::do.call(...)
   4.     └─stringdist (local) `<fn>`(...)
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 30 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [29s/71s] ERROR
Error(s) in re-building vignettes:
--- re-building ‘Fuzzy-matching.Rmd’ using rmarkdown

Quitting from lines 76-83 [unnamed-chunk-2] (Fuzzy-matching.Rmd)
Error: processing vignette 'Fuzzy-matching.Rmd' failed with diagnostics:
cannot coerce type 'NULL' to vector of type 'integer'
--- failed re-building ‘Fuzzy-matching.Rmd’

--- re-building ‘Intro-to-fedmatch.Rmd’ using rmarkdown

Quitting from lines 61-64 [unnamed-chunk-3] (Intro-to-fedmatch.Rmd)
Error: processing vignette 'Intro-to-fedmatch.Rmd' failed with diagnostics:
cannot coerce type 'NULL' to vector of type 'integer'
--- failed re-building ‘Intro-to-fedmatch.Rmd’

--- re-building ‘Multivar_matching.Rmd’ using rmarkdown

Quitting from lines 36-60 [unnamed-chunk-3] (Multivar_matching.Rmd)
Error: processing vignette 'Multivar_matching.Rmd' failed with diagnostics:
cannot coerce type 'NULL' to vector of type 'integer'
--- failed re-building ‘Multivar_matching.Rmd’

--- re-building ‘Using-clean-strings.Rmd’ using rmarkdown

Quitting from lines 52-53 [unnamed-chunk-4] (Using-clean-strings.Rmd)
Error: processing vignette 'Using-clean-strings.Rmd' failed with diagnostics:
cannot coerce type 'NULL' to vector of type 'integer'
--- failed re-building ‘Using-clean-strings.Rmd’

--- re-building ‘Using-tier-match.Rmd’ using rmarkdown

Quitting from lines 95-96 [unnamed-chunk-5] (Using-tier-match.Rmd)
Error: processing vignette 'Using-tier-match.Rmd' failed with diagnostics:
cannot coerce type 'NULL' to vector of type 'integer'
--- failed re-building ‘Using-tier-match.Rmd’

SUMMARY: processing the following files failed:
  ‘Fuzzy-matching.Rmd’ ‘Intro-to-fedmatch.Rmd’ ‘Multivar_matching.Rmd’
  ‘Using-clean-strings.Rmd’ ‘Using-tier-match.Rmd’

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [10s/22s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 2 ERRORs
See
  ‘/data/gannet/ripley/R/packages/tests-devel3/fedmatch.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 4:57.44, 112.57 + 16.05