Research Students

Research students
     
Fadhel Ayed
Supervisor: François Caron
Fergus Boyles
Oxford Protein Informatics Group
Supervisors: Garrett Morris and Charlotte Deane
Systems Biology CDT
Lyuba Bozhilova
Oxford Protein Informatics Group
Confidence in protein interaction networks
Supervisors: Gesine Reinert and Charlotte Deane
Systems Approaches to Biomedical Sciences CDT
Elizabeth Byrne
Interrogating the intersection of genetic and gender based risk for MS
Supervisor: Gil McVean
Christian Carmona Perez
Supervisor: Geoff Nicholls
Ryan Christ Ancestral tree as weighted networks: applications in genome-wide association and selection scans
Supervisors: Chris Holmes and David Steinsaltz
Mathias Cronjager

Evolutionary Bioinformatics Group
Scaleable Monte Carlo Methods for sequence data related by coalescent models
Supervisor: Jotun Hein
Statistical Science (EPSRC and MRC Centre for Doctoral Training)

Jimi Cullen
Evolutionary Bioinformatics Group
Stochastic models of evolutions of multigene famies by gain and loss
Supervisors: Jotun Hein and Peter Holland
Systems Biology CDT
Laura Depner
Oxford Protein Informatics Group
Improving biologically inspired protein structure prediction
Supervisors: Charlotte Deane, Saulo Oliviera and Jiye Shi
Systems Approaches to Biomedical Sciences CDT
Giuseppe di Benedetto
OxCSML
Robust Bayesian approaches to scalable inference for biomedical applications
Supervisors: François Caron and Yee Whye Teh
Statistical Science (EPSRC and MRC Centre for Doctoral Training)
Bo Fan
Probability Group
Ageing of complex systems modelled by interdependency networks
Supervisor: David Steinsaltz
Tamara Fernandez Aguilar
Gaussian process for survival analysis
Supervisor: Yee Whye Teh
Christopher Gill
Statistical Genomics
Statistical methods for direct-to-consumer genetic testing
Supervisors: Jonathan Marchini and Simon Myers
Systems Approaches to Biomedical Sciences CDT
Michael Golden Evolutionary Bioinformatics Group
Evolutionary analysis of biological structures
Supervisor: Jotun Hein
Mitch Gooding
Probability Group
Calculation of moments of competing Super Brownian motion
Supervisor: Alison Etheridge
Ross Haines
Spatial models for late Mediaeval English dialects
Supervisor: Geoff Nicholls
Frauke Harms
OxCSML
Bayesian nonparametrics
Supervisor: Yee Whye Teh
Leonard Hasenclever
OxCSML
Large-scale Bayesian learning
Supervisor: Yee Whye Teh
Statistical Science (EPSRC and MRC Centre for Doctoral Training)
Alexander Homer
Probability Group
Supervisor: Christina Goldschmidt
Hyun Jik Kim
OxCSML
Scalable applications of Gaussian processes
Supervisor:Yee Whye Teh
Mikolaj Kasprzak
Probability Group
Stein's method for functional approximation
Supervisor: Gesine Reinert
Adam Kay
Properties of the Arboreal Fourier Transform
Supervisor: Colin McDiarmid
Joyce Klu
Opinion dynamics on evolving social networks: towards modelling the effect of added new information
Supervisor: Gesine Reinert
Aleksandr Kovaltsuk
Oxford Protein Informatics Group
Supervisor: Charlotte Deane
Interdisciplinary Bioscience DTP
Eleanora Kreacic
Probability Group
Transmission of information and random matchings on the complete graph
Supervisors: Christina Goldschmidt and James Martin
William Larsen
Evolutionary Bioinformatics Group
Supervisor: Jotun Hein
Eleanor Law
Oxford Protein Informatics Group
Computational studies of structural motifs and co-translational folding mechanisms of membrane and soluble proteins
Supervisors: Charlotte Deane and Jiye Shi
Systems Approaches to Biomedical Sciences CDT
Leon Law
OxCSML
Scalable and model-driven kernel methods
Supervisors: Dino Sejdinovic, Yee Whye Teh and Christopher Yau (University of Bristol)
Statistical Science (EPSRC and MRC Centre for Doctoral Training)
Jinwoo Leem
Oxford Protein Informatics Group
Development of computational methodologies for antibody design
Supervisors: Kanti Mardia and Charlotte Deane
Susan Leung
Oxford Protein Informatics Group
Fragment-based drug discovery for inhibitors of the PHIP (2) bromodomain
Supervisors: Garrett Morris
Systems Approaches to Biomedical Sciences CDT
Zhu Li
An analysis of prison study through the bivariate negative binomial model and the Bayesian hierarchical model
Supervisors:Dino Sejdinovic and  David Steinsaltz
Thibaut Lienart
OxCSML
The choice of normalization in generalized two-filter smoothing and links with belief propagation
Supervisors: Arnaud Doucet and Yee Whye Teh
Malte Luecken
Oxford Protein Informatics Group
Application of multi-resolution partitioning of interaction networks to the study of complex disease
Supervisors: Gesine Reinert and Charlotte Deane
Xiaoyu  Lu
OxCSML
Tucker Gaussian processes and relativistic Monte Carlo
Supervisor: Yee Whye Teh
Statistical Science (EPSRC and MRC Centre for Doctoral Training)
Simon Lyddon
OxCSML
Robust Bayesian approaches to scalable inference for biomedical applications
Supervisor: Chris Holmes
Statistical Science (EPSRC and MRC Centre for Doctoral Training)
Christopher Maddison
OxCSML
Supervisors: Yee Whye Teh and Arnaud Doucet
Claire Marks
Oxford Protein Informatics Group
Antibody modelling: CDR-H3 structure prediction
Supervisor: Charlotte Deane
Kaspar Martens
OxCSML
Supervisors: Dino Sejdinovic and Yee Whye Teh
Statistical Science (EPSRC and MRC Centre for Doctoral Training)
Alistair Martin
Oxford Protein Informatics Group
Structurally associated conservation of translation speed within protein families
Supervisor: Charlotte Deane
Lawrence Middleton
Scaling particle Markov chain Monte Carlo for high-dimensional state-space models
Supervisors: Arnaud Doucet, Chris Holmes and Anthony Lee (University of Warwick)
Statistical Science (EPSRC and MRC Centre for Doctoral Training)
Xenia Miscouridou
OxCSML
Sparse dynamic network models
Supervisors: François Caron and Yee Whye Teh
Statistical Science (EPSRC and MRC Centre for Doctoral Training)
Jovana Mitrovic
OxCSML
Deep kernel machines
Supervisors: Dino Sejdinovic and Yee Whye Teh
Statistical Science (EPSRC and MRC Centre for Doctoral Training)
Gurjinder Singh Mohan
Dynamic longitudinal survival analysis
Supervisor: David Steinsaltz
Jaroslaw Nowak
Oxford Protein Informatics Group
Understanding antibody binding sites
Supervisors: Charlotte Deane and Sebastian Kelm
Systems Approaches to Biomedical Sciences CDT
Luis Ospina Forero
Oxford Protein Informatics Group
Modelling the ego-networks of protein-protein interaction networks
Supervisors: Gesine Reinert and Charlotte Deane
Hannah Patel

Oxford Protein Informatics Group
Novelty score: prioritising compountds that are novel scaffolds or form novel protein-ligand interactions using an interaction centric approach
Supervisors: Charlotte Deane and Garrett Morris
Systems Approaches to Biomedical Sciences CDT
Cristian Regep
Oxford Protein Informatics Group
Using structural fragments to design antibody binding sites
Supervisors: Charlotte Deane and Sebastian Kelm
Systems Approaches to Biomedical Sciences CDT
Mark Roeling
Supervisor: Geoff Nicholls
Dane Rogers
Probability Group
Evolution of (α,θ) - strings of beads
Supervisor: Matthias Winkel
Simone Rubinacci
Statistical Genomics
Haplotype phasing using the UK Biobank resource
Supervisor: Jonathan Marchini
Systems Biology CDT
Tammo Rukat
OxCSML
Statistical machine learning for genomics
Supervisors: Chris Yau (University of Bristol) and Chris Holmes
Systems Approaches to Biomedical Sciences CDT
Sebastian Schmon
OxCSML
Methodology and analysis of pseudo-marginal Metropolis-Hastings algorithms
Supervisor: Arnaud Doucet
Aaron Smith
Probability Group
Supervisor: Alison Etheridge
Leo Speidel
Inference of ancestral recombination graphs from DNA sequence data
Supervisor: Simon Myers
Systems Biology CDT
Roman Stasinski
Probability Group
Supervisors: Julien Berestycki and James Martin
Tjun Kiat Teo Classification of partially labelled data using 'Mixture of Experts' Models
Supervisor: Brian Ripley
Owen Thomas
Scalable Gaussian processes for case-control analysis
Supervisor: Chris Holmes
Paul Vanetti
On novel particle MCMC methods
Supervisor: Arnaud Doucet
Statistical Science (EPSRC and MRC Centre for Doctoral Training)
Andi Wang
Probability Group
Supervisors: David Steinsaltz and Gareth Roberts (University of Warwick)
Statistical Science (EPSRC and MRC Centre for Doctoral Training)
Fan Wang
Probability Group
Computing Lyapunov exponent for products of random matrices
Supervisor: David Steinsaltz
Clare West
Oxford Protein Informatics Group
Investigating the different folding mechanisms for proteins
Supervisors: Charlotte Deane, Saulo Pires de Oliveira and Jiye Shi
Systems Approaches to Biomedical Sciences CDT
Matthew Willetts
OxCSML
Supervisor: Chris Holmes
Systems Biology CDT
Dominic Yeo
Probability Group
Self-organised criticality in random graph processes
Supervisors: Christina Goldschmidt and James Martin
Qinyi Zhang
OxCSML
Nonparametric association measures for large-scale hypothesis testing
Supervisors: Dino Sejdinovic and Yee Whye Teh

Oxford Warwick Statistics Programme (OxWaSP) Students 2016/2017 cohort

Virginia Aglietti
Jack Carter
Samuel Davenport
Arne Gouwy
Jeremias Knoblauch
Petya Kindalova
Tamar Loach
Giulio Morina
Emilia Pompe
Dominic Richards

Link to University email and telephone contact details