design and analysis of the 7 genome-wide association studies carried out by the Wellcome Trust Case-Control Consortium (WTCCC) [2].
| LICENCE | CONTRIBUTORS | REFERENCES | CONTACT |
| IMPUTE | a program for
genotype imputation in genome-wide association studies and fine-mapping
studies based on a dense set of marker data (such as HapMap) [1,4,6] |
v2.2.2 |
27-01-2012 |
| SNPTEST | a program for
Frequentist and Bayesian tests of SNP association with binary
(case-control) and quantitative phenotypes that takes genotype uncertainty into account [1,6] |
v2.3.0 |
16-12-2011 |
| HAPGEN |
a program to simulate
case control datasets at linked SNP markers conditional upon a set of known haplotypes [3] |
v2.2.0 |
01-04-2011 |
| META |
a
program
to
carryout
meta-analysis
of
genetic
studies. |
v1.4.0 |
19-12-2011 |
| GENECLUSTER |
a
program
for
location
and
detection
of
unobserved
causal
loci in
fine-mapping experiments and genome-wide association studies [5] |
v1.0.0 |
19-03-2010 |
| QCTOOL |
a
program
for
carrying
out
SNP
and
sample quality control (QC) for
genome-wide association studies |
v1.0.0 |
26-07-2010 |
| CHIAMO |
a
genotype
calling
algorithm
for
multi-cohort
studies
|
v0.2.1 |
22-10-2007 |
| GTOOL |
a
program
for
(a)
generating
subsets
of
genotype
data,
and (b) converting
genotype data between the PED file format and the FILE FORMAT used by SNPTEST and IMPUTE. |
v0.7.0 |
15-08-2011 |
Please fill out the REGISTRATION FORM to receive emails about updates to any of these software packages.
Most of these programs are designed to work together in a seamless fashion (based on a central FILE FORMAT). A schematic illustrating how they can be combined is given below.
