Publications

  1. Kashir J., Konstantinidis, M., Jones, C., Lemmon, B., Chang Lee, H., Hamer, R., Heindryckx, B., Deane, C. M., De Sutter, P., Fissore, R. A., Parrington, J., Wells, D., Coward, K.

A maternally inherited autosomal point mutation in human phospholipase C zeta leads to male infertility.

Human Reproduction, 2012; 27(1):222-31

  1. Stevens, J. M., Mavridou, D. A. I., Hamer, R., Kritsiligkou, P., Goddard, A. D., and Ferguson, S. J.

Cytochrome c biogenesis System I

FEBS Journal, 2011; 278(22):4170-8

  1. Hamer, R.,Luo, Q., Armitage, J. P., Reinert, G. and Deane, C. M.

i-Patch: Inter-protein contact prediction using local network information.

Proteins: Structure, Function and Bioinformatics, 2010;78(13):2781-97

  1. Hamer R.,Chen, P-Y., Armitage, J. P. and Deane, C. M.

Deciphering chemotaxis pathways using cross species comparisons.

BMC Systems Biology 2010,4(3) doi:10.1186/1752-0509-4-3

  1. Scott,K.A., Porter,S.L., Bagg,E.A.L., Hamer,R., Hill,J.L., Wilkinson,D.A. and Armitage,J.P.

Specificity of localization and phosphotransfer in the CheA Proteins of Rhodobacter sphaeroides

Molecular Microbiology 2010;76(2):318-330

  1. Heytens E., Parrington J., Coward K., Lambrecht S., Young C., Hamer R., Deane C. M., Soleimani R., Cuvelier C., Gerris J., Dhont M., Deforce D., Leybaert L. and De Sutter P.

Reduced amounts and abnormal forms of phospholipase C zeta (PLCζ) in spermatozoa from infertile men.

Human Reproduction 2009;24(10):2417-28

  1. Nettleship J. E., Flanagan A., Rahman-Huq N., Hamer R.,Owens R. J.

Converting monoclonal antibodies into Fab fragments for transient

expression in mammalian cells

Invited article for Methods in Molecular Biology (Humana Press), March 2009


  1. Yang Z. R. and Hamer R.

Bio-basis function neural networks in protein data mining.

Curr Pharm Des. 2007;13(14):1403-13.

  1. Esnouf R. M., Hamer R., Sussman J. L., Silman D., Trudgian D., Yang Z. R., Prilusky J.

Honing the in silico toolkit for detecting protein disorder.

Acta Cryst D 2006;62:1260-1266

  1. Albeck S.,Alzari P.,Andreini C.,Banci L.,Berry I. M.,Bertini I.,Cambillau C.,Canard B.,Carter L.,Cohen S. X.,Diprose J. M.,Dym O.,Esnouf R. M.,Felder C.,Ferron F.,Guillemot F.,Hamer R.,Ben Jelloul M.,Laskowski R. A.,Laurent T.,Longhi S.,Lopez R.,Luchinat C.,Malet H.,Mochel T.,Morris R. J.,Moulinier L.,Oinn T.,Pajon A.,Peleg Y.,Perrakis A.,Poch O.,Prilusky J.,Rachedi A.,Ripp R.,Rosato A.,Silman I.,Stuart D. I.,Sussman J. L.,Thierry J. C.,Thompson J. D.,Thornton J. M.,Unger T.,Vaughan B.,Vranken W.,Watson J. D.,Whamond G.,Henrick, K.

SPINE bioinformatics and data-management aspects of high-throughput structural biology.

Acta Cryst D, 2006;62(10):1184-1195

  1. Yang Z. R., Dry J., Thomson R., Hodgman T. C.

A bio-basis function neural network for protein peptide cleavage activity

characterisation.

Neural Netw. 2006;19(4):401-7.

  1. Yang Z. R., Thomson R., McNeil P., Esnouf R. M.

RONN: the bio-basis function neural network technique applied to the detection of natively disordered regions in proteins.

Bioinformatics. 2005;21(16):3369-76.

  1. Yang Z. R. and Thomson R.

Bio-basis function neural network for prediction of protease cleavage sites in

proteins.

IEEE Trans Neural Netw. 2005;16(1):263-74.

  1. Thomson R. and Esnouf R.

Prediction of natively disordered regions in proteins using a bio-basis function neural network.

Intelligent Data Engineering and Automated Learning - IDEAL 2004

5th International Conference, Exeter, UK, August 25-27, 2004, Proceedings
Lecture Notes in Computer Science;3177:108-116

  1. Yang Z. R., Thomson R., Hodgman T. C., Dry J., Doyle A. K., Narayanan A., Wu X.

Searching for discrimination rules in protease proteolytic cleavage activity

using genetic programming with a min-max scoring function.

Biosystems. 2003;72(1-2):159-76.

  1. Thomson R., Hodgman T. C., Yang Z. R., Doyle A. K.

Characterizing proteolytic cleavage site activity using bio-basis function neural

networks.

Bioinformatics. 2003;19(14):1741-7.

  1. Thomson R., Pickup R., Porter J.

A novel method for the isolation of motile bacteria using gradient culture systems.

J Microbiol Methods. 2001;46(2):141-7.