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Resources

Below is a list of resources produced by the Oxford Protein Informatics Group. This includes links to software written by group members as well as supplementary material associated with our papers. Resources are sorted by release date, with the most recent at the top.

 

Interactive Resources (alphabetical order)

 

 

All Resources (chronological order)

 

The Function of Communities in Protein Interaction Networks
A.C.F. Lewis, N.S.Jones, M.A.Porter and C.M.Deane
2009;

 

FREAD Revisited: Database Search Loop Structure Prediction
Yoonjoo Choi and Charlotte M. Deane
2009;

 

Deciphering Chemotaxis Pathways Using Cross Species Comparisons
Rebecca Hamer, Pao-Yang Chen, Judith Armitage, Gesine Reinert and Charlotte M. Deane
2009;

 

iMembrane: Homology-based Membrane-Insertion of Proteins
Sebastian Kelm, Jiye Shi and Charlotte M. Deane
2009; Bioinformatics

 

Sequence restrictions on structural choices at the amino terminus of proteins
Rhodri Saunders, Martin Mann and Charlotte M. Deane
2009;

 

Predicting and Validating Protein Interactions Using Network Structure
Pao-Yang Chen, Charlotte M. Deane and Gesine Reinert
2008 Jul 25; PLoS Comput Biol

 

A Statistical Approach Using Network Structure in The Prediction of Protein Characteristics
Pao-Yang Chen, Charlotte M. Deane and Gesine Reinert
2007 Jun 28; Bioinformatics