Teaching material and exercises
The first lecture of each week is at 5pm on Monday and the second at 3pm on Wednesday in the Lecture Theatre, Dept Statistics, 1 South Parks Road.
Classes take place on Wednesday at 12pm and Thursday at 3pm in the Seminar Room, 1 South Parks Road.
Week 1
Lecture 1: Models of Substitution I: Basic Models (10.10.11) [PDF] Print pdf
Lecture 2: Models of Substitution II: Complex Models (12.10.11) [PPT]
Week 2
Lecture 3: Phylogenies I: Combinatorics (17.10.11) [PPT]
Lecture 4: Phylogenies II: Distance, Parsimony & Likelihood (19.10.11) [PPT]
Week 3
Lecture 5: The Ancestral Recombination Graph & Pedigrees (24.10.11) [PPT]
Lecture 6: Alignment Algorithms I Optimisation Alignment (26.10.11) [PPT]
Week 4
Lecture 7: Alignment Algorithms II Statistical Alignment (31.10.11) [PPT]
Lecture 8: Stochastic Grammars and their Biological Applications: Hidden Markov Models (2.11.11)
Week 5
Lecture 9: RNA Structures (7.11.11) Slides 1 and Slides 2
Lecture 10: Finding Signals in Sequences (9.11.11) [PPT]
Week 6
Lecture 11: Challenges in Genome Annotation (14.11.11) [PPT]
Lecture 12: Networks: Dynamics and Inference (16.11.11) [PPT]
Week 7
Lecture 13: Stochastic Grammars and their Biological Applications: Stochastic Context Free Grammars (21.11.11)
Lecture 14: Models of Evolution of Structures & Movements & Shapes & Grammars (23.11.11) [PPT]
Week 8
Lecture 15: Integrative Genomics: The Omics (28.11.11) [PPT]
Lecture 16: Integrative Genomics: Mapping (30.11.11) [PPT]
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