THANK YOU for using IMGT/GENE-DB |
![]()
|
IMGT®, the international ImMunoGeneTics information system® | http://www.imgt.org |
Citing IMGT/GENE-DB
: Giudicelli, V. et al. Nucleic Acids Res., 33: D256 - D261 (2005).
PMID: 15608191
![]() |
IMGT/GENE-DB program version: 3.1.21 (17 January 2019)
IMGT/GENE-DB data updates
The FASTA header contains 15 fields separated by '|': 1. IMGT/LIGM-DB accession number(s) 2. IMGT gene and allele name 3. species 4. IMGT allele functionality 5. exon(s), region name(s), or extracted label(s) 6. start and end positions in the IMGT/LIGM-DB accession number(s) 7. number of nucleotides in the IMGT/LIGM-DB accession number(s) 8. codon start, or 'NR' (not relevant) for non coding labels 9. +n: number of nucleotides (nt) added in 5' compared to the corresponding label extracted from IMGT/LIGM-DB 10. +n or -n: number of nucleotides (nt) added or removed in 3' compared to the corresponding label extracted from IMGT/LIGM-DB 11. +n, -n, and/or nS: number of added, deleted, and/or substituted nucleotides to correct sequencing errors, or 'not corrected' if non corrected sequencing errors 12. number of amino acids (AA): this field indicates that the sequence is in amino acids 13. number of characters in the sequence: nt (or AA)+IMGT gaps=total 14. partial (if it is) 15. reverse complementary (if it is)
>X01018|TRBJ1-1*01|Mus musculus_B10.A|F|J-REGION|73..120|48 nt|3| | | |15 AA|15+0=15| | | NTEVFFGKGTRLTVV >M11456|TRBJ1-1*02|Mus musculus_BALB/cxC56BL/6(F1)|(F)|J-REGION|371..418,g|48 nt|3| |1| |15 AA|15+0=15| | | NTEVFFGKGTTLTVV >X01018|TRBJ1-2*01|Mus musculus_B10.A|F|J-REGION|209..256|48 nt|3| | | |15 AA|15+0=15| | | NSDYTFGSGTRLLVI >X01018|TRBJ1-3*01|Mus musculus_B10.A|F|J-REGION|549..598|50 nt|2| | | |16 AA|16+0=16| | | SGNTLYFGEGSRLIVV >X01018|TRBJ1-4*01|Mus musculus_B10.A|F|J-REGION|1036..1086|51 nt|3| | | |16 AA|16+0=16| | | SNERLFFGHGTKLSVL >AE000665|TRBJ1-4*02|Mus musculus_BALB/c|F|J-REGION|154903..154953|51 nt|3| | | |16 AA|16+0=16| | | SNERLFFGHGTKLSVL >AE000665|TRBJ1-5*01|Mus musculus_BALB/c|F|J-REGION|155176..155225|50 nt|2| | | |16 AA|16+0=16| | | NNQAPLFGEGTRLSVL >X01018|TRBJ1-5*02|Mus musculus_B10.A|F|J-REGION|1309..1357|49 nt|1| | | |16 AA|16+0=16| | | *QPAPLFGEGTRLSVL >U77843|TRBJ1-5*03|Mus musculus_SJL/J|F|J-REGION|1882..1931|50 nt|2| | | |16 AA|16+0=16| | | NNQAQHFGEGTRLSVL >X01018|TRBJ1-6*01|Mus musculus_B10.A|ORF|J-REGION|1778..1830|53 nt|2| | | |17 AA|17+0=17| | | SYNSPLYFAAGTRLTVT >X01018|TRBJ1-7*01|Mus musculus_B10.A|ORF|J-REGION|1867..1912|46 nt|1| | | |15 AA|15+0=15| | | PVLDDHGLGKELRYK >K02802|TRBJ2-1*01|Mus musculus_B10.A|F|J-REGION|405..454|50 nt|2| | | |16 AA|16+0=16| | | NYAEQFFGPGTRLTVL >K02802|TRBJ2-2*01|Mus musculus_B10.A|F|J-REGION|608..658|51 nt|3| | | |16 AA|16+0=16| | | NTGQLYFGEGSKLTVL >K02802|TRBJ2-3*01|Mus musculus_B10.A|F|J-REGION|874..922|49 nt|1| | | |16 AA|16+0=16| | | SAETLYFGSGTRLTVL >K02802|TRBJ2-4*01|Mus musculus_B10.A|F|J-REGION|1013..1061|49 nt|1| | | |16 AA|16+0=16| | | SQNTLYFGAGTRLSVL >K02802|TRBJ2-5*01|Mus musculus_B10.A|F|J-REGION|1104..1152|49 nt|1| | | |16 AA|16+0=16| | | NQDTQYFGPGTRLLVL >K02802|TRBJ2-6*01|Mus musculus_B10.A|P|J-REGION|1248..1295|48 nt|3| | | |15 AA|15+0=15| | | ALALTDWQPIEQPMR >K02802|TRBJ2-7*01|Mus musculus_B10.A|F|J-REGION|1460..1506|47 nt|2| | | |15 AA|15+0=15| | | SYEQYFGPGTRLTVL >M16122|TRBJ2-7*02|Mus musculus_C57BL/6|(F)|J-REGION|573..619,g|47 nt|2| |1| |15 AA|15+0=15| | | SYEQYFGPGTRLTVL >IMGT000023|TRBJ1-1*01|Mustela putorius furo_sable|ORF|J-REGION|201954..202001|48 nt|3| | | |15 AA|15+0=15| | | NTELFFGEGTRLTVI >IMGT000023|TRBJ1-2*01|Mustela putorius furo_sable|F|J-REGION|202089..202132|44 nt|2| | | |14 AA|14+0=14| | | YDFTFGPGTKLTVV >IMGT000023|TRBJ1-3*01|Mustela putorius furo_sable|P|J-REGION|202736..202785|50 nt|2| | | |16 AA|16+0=16| | | S*DTLHFGEGTRLTVV >IMGT000023|TRBJ1-4*01|Mustela putorius furo_sable|ORF|J-REGION|203329..203378|50 nt|2| | | |16 AA|16+0=16| | | NNEKLYFASGTKLSVL >IMGT000023|TRBJ1-5*01|Mustela putorius furo_sable|F|J-REGION|203575..203624|50 nt|2| | | |16 AA|16+0=16| | | SNQAQHFGDGTQLLVL >IMGT000023|TRBJ1-6*01|Mustela putorius furo_sable|F|J-REGION|204045..204097|53 nt|2| | | |17 AA|17+0=17| | | SYNSPLYFGMGTRLTVT >IMGT000023|TRBJ2-1*01|Mustela putorius furo_sable|ORF|J-REGION|211338..211387|50 nt|2| | | |16 AA|16+0=16| | | SYSEQHFGPGTRLTVL >IMGT000023|TRBJ2-2*01|Mustela putorius furo_sable|F|J-REGION|211534..211584|51 nt|3| | | |16 AA|16+0=16| | | NTGQLYFGAGSKLTVL >IMGT000023|TRBJ2-3*01|Mustela putorius furo_sable|F|J-REGION|211775..211823|49 nt|1| | | |16 AA|16+0=16| | | SGETQYFGRGTRLTVL >IMGT000023|TRBJ2-4*01|Mustela putorius furo_sable|F|J-REGION|211910..211958|49 nt|1| | | |16 AA|16+0=16| | | SQNTQYFGAGTRLTVL >IMGT000023|TRBJ2-5*01|Mustela putorius furo_sable|ORF|J-REGION|212015..212067|53 nt|2| | | |17 AA|17+0=17| | | FAASALSFGAGSRLTVL >IMGT000023|TRBJ2-6*01|Mustela putorius furo_sable|F|J-REGION|212245..212291|47 nt|2| | | |15 AA|15+0=15| | | SYEQYFGSGTRLTVI
Authors: Hugo Duvergey, Denis Moreno, Mansour Saljoqi, Véronique Giudicelli and Marie-Paule Lefranc
IMGT/GENE-DB scientific responsibles: Véronique Giudicelli (Veronique.Giudicelli@igh.cnrs.fr) and Marie-Paule Lefranc (Marie-Paule.Lefranc@igh.cnrs.fr)
Software material and data coming from IMGT server may be used for academic research only,
provided that it is referred to IMGT®, and cited as
"IMGT®, the international ImMunoGeneTics information system®
http://www.imgt.org
(founder and director: Marie-Paule Lefranc, Montpellier, France)."
References to cite:
Lefranc, M.-P. et al.,
Nucleic Acids Research, 27, 209-212 (1999)
Cover of NAR;
Ruiz, M. et al.,
Nucleic Acids Research, 28, 219-221 (2000);
Lefranc, M.-P.,
Nucleic Acids Research, 29, 207-209 (2001);
Lefranc, M.-P.,
Nucleic Acids Res., 31, 307-310 (2003);
Lefranc, M.-P. et al.,
In Silico Biol., 5, 0006 (2004) [Epub],
5, 45-60 (2005);
Lefranc, M.-P. et al.,
Nucleic Acids Res., 33, D593-D597 (2005)
Full text,
Lefranc, M.-P. et al.,
Nucleic Acids Research 2009 37(Database issue): D1006-D1012; doi:10.1093/nar/gkn838
Full text.
For any other use please contact Marie-Paule Lefranc Marie-Paule.Lefranc@igh.cnrs.fr.
IMGT® Founder and Executive Director Emeritus:
Marie-Paule Lefranc
Marie-Paule.Lefranc@igh.cnrs.fr
IMGT® Director:
Sofia Kossida
Sofia.Kossida@igh.cnrs.fr
Bioinformatics manager:
Véronique Giudicelli
Veronique.Giudicelli@igh.cnrs.fr
Computer manager:
Patrice Duroux
Patrice.Duroux@igh.cnrs.fr
Webmaster:
Amélie Houles
Citing IMGT | Warranty disclaimer and copyright notice | Privacy policy and advertisement policy
© Copyright 1995-2019 IMGT®, the international ImMunoGeneTics information system®