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for using IMGT/GENE-DB

IMGT®, the international ImMunoGeneTics information system® http://www.imgt.org

Citing IMGT/GENE-DB : Giudicelli, V. et al. Nucleic Acids Res., 33: D256 - D261 (2005). PMID: 15608191

IMGT/GENE-DB program version: 3.1.21 (17 January 2019)
IMGT/GENE-DB data updates

IMGT/GENE-DB reference sequences in FASTA format:

Amino acids sequences with gaps according to the IMGT unique numbering
for F+ORF+in-frame P with IMGT Gaps alleles including orphons


The FASTA header contains 15 fields separated by '|':

1. IMGT/LIGM-DB accession number(s)
2. IMGT gene and allele name
3. species
4. IMGT allele functionality
5. exon(s), region name(s), or extracted label(s)
6. start and end positions in the IMGT/LIGM-DB accession number(s)
7. number of nucleotides in the IMGT/LIGM-DB accession number(s)
8. codon start, or 'NR' (not relevant) for non coding labels
9. +n: number of nucleotides (nt) added in 5' compared to the corresponding label extracted from IMGT/LIGM-DB
10. +n or -n: number of nucleotides (nt) added or removed in 3' compared to the corresponding label extracted from IMGT/LIGM-DB
11. +n, -n, and/or nS: number of added, deleted, and/or substituted nucleotides to correct sequencing errors, or 'not corrected' if non corrected sequencing errors
12. number of amino acids (AA): this field indicates that the sequence is in amino acids
13. number of characters in the sequence: nt (or AA)+IMGT gaps=total
14. partial (if it is)
15. reverse complementary (if it is)

Number of results = 25
>FP312898|IGKV1-11*01|Sus scrofa|F|V-REGION|15192..15478|287 nt|1| | | |95 AA|95+16=111| | |
AIQLTQSPASLAASLGDTVSITCRASQSI......NKWLAWYQQQAGKAPKLLIYSA...
....STLQSGVP.SRFKGSG..SGTDFTLTISGLQAEDVATYYCQQHHSAP
>CU694848|IGKV1-11*02|Sus scrofa|F|V-REGION|115750..116036|287 nt|1| | | |95 AA|95+16=111| |rev-compl|
AIQLTQSPASLAASLGDTVSITCRASQSI......NKWLAWYQQQPGKAPKLLIYSA...
....STLQSGVP.CGFKGSG..SGTDFTLTISGLQAEDVATYYCQQHHSAP
>FP312898|IGKV1-14*01|Sus scrofa|F|V-REGION|48786..49072|287 nt|1| | | |95 AA|95+16=111| |rev-compl|
AIQLTQSPASLAASLGDTVSITCRARQSI......SSYLAWYQQQPGKTPKLLFYDA...
....CTLQSGVP.CGFKGSG..SGTHFTVTISGLQAEDVATYYCQQLNNAP
>FP312898|IGKV1-7*01|Sus scrofa|F|V-REGION|42163..42449|287 nt|1| | | |95 AA|95+16=111| | |
AIQLTQSPASLAASLGDTVSITCRAHQTI......SSYLAWYQQQPGKPPKLLLCDA...
....CTLQSGVP.CGFKGSG..SGTHFTLTISGLQAEDVATYYCQQLNNAP
>CU694848|IGKV1-7*02|Sus scrofa|F|V-REGION|87991..88277|287 nt|1| | | |95 AA|95+16=111| |rev-compl|
AIQLTQSPASLAASLGDTVSITCRARQSI......SSYLAWYQQQPGKPPKLLLCDA...
....CTLQSGVP.CGFKGSG..SGTHFTVTISGLQAEDVATYYCQQLNNAP
>FP312898|IGKV1-9*01|Sus scrofa|F|V-REGION|24916..25202|287 nt|1| | | |95 AA|95+16=111| | |
AIQLTQSPASLAASLGDTVSITCRASQSV......SNNLAWYQQQAGKPPKLLIYWA...
....SALQSGVP.SRFKGSV..SGTDFTLTISGLQAEDVATYYCQQLNSAP
>CU694848|IGKV1-9*02|Sus scrofa|F|V-REGION|106011..106297|287 nt|1| | | |95 AA|95+16=111| |rev-compl|
AIQMTQSPASLAASLGDTVSITCRASQSV......SNNLAWYQQQAGKAPKLLIYWA...
....STLQSGVP.SRFKGSV..SGTDFTLTISGLQAEDVATYSCQQLNSAP
>FP312898|IGKV1D-11*01|Sus scrofa|F|V-REGION|60631..60917|287 nt|1| | | |95 AA|95+16=111| |rev-compl|
AIQLTQSPASLAASLGDTVSITCRASQSI......NKWLAWYQQQAGKAPKLLIYSA...
....STLQSGVP.SRFKGSG..SGTDFTLTISGLQAEDVATYYCQQHHSAP
>FP312898|IGKV2-10*01|Sus scrofa|F|V-REGION|21360..21661|302 nt|1| | | |100 AA|100+11=111| | |
AIVLTQTPLSLSVSPGEPASISCRSSQSLVDS.DGDSLLHWYLQKPGQSPQLLIYEA...
....TNRASGVP.DRFSGSG..SGTDFTLKISRVEAEDVGVYYCFQALQSP
>CU694848|IGKV2-10*02|Sus scrofa|F|V-REGION|109560..109861|302 nt|1| | | |100 AA|100+11=111| |rev-compl|
AIVLTQTPLSLSVSPGEPASISCRSSQSLLHT.DGKNYLNWYLQKPGQSPQRLIYQA...
....TNRDTGVP.DRFSGSG..SGTDFTLKISRVEAEDVGVYYCFQALQSP
>FP312898|IGKV2-12*01|Sus scrofa|F|V-REGION|6765..7066|302 nt|1| | | |100 AA|100+11=111| | |
AIVLTQTPLSLSVSPGEPASISCRSTQSLRGS.YGKNYLNWYQQKPGQSPKLLIYWA...
....TNRASGVP.DRFSGSR..SGTDFTLKIIRLEAEDAGVYSCLQDIQSP
>CU694848|IGKV2-12*02|Sus scrofa|F|V-REGION|124132..124433|302 nt|1| | | |100 AA|100+11=111| |rev-compl|
AIVLTQTPLSLSVSPGEPASISCRSTQSLRGS.YGKNYLNWYLQKPGQSPKLLIYWA...
....TNRASGVP.GRFSGSR..SGTDFTLKIIRLEAEDAGVYYCLQDIQSP
>FP312898|IGKV2-13*01|Sus scrofa|F|V-REGION|56532..56830|299 nt|1| | | |99 AA|99+12=111| |rev-compl|
AIVLTQTPLSLSVSPGEPASISCRSSQSLEI..YGNNFLSWYQQKPGQSPQLLIYEA...
....TNRASGVP.DRFSGSG..SGTDFTLKISRVEAEDAGVYYCQQNKESL
>CU694848|IGKV2-13*02|Sus scrofa|F|V-REGION|4457..4755|299 nt|1| | | |99 AA|99+12=111| | |
AIVLTQTPLSLSVSPGEPASISCRSSQSLEE..YGSNLLSWYQQKPGQSPQLLIYEA...
....TNRASGVP.DRFSGSG..SGTDFTLKISRVEAEDAGVYYCQQFKEFP
>FP312898|IGKV2-5*01|Sus scrofa|P|V-REGION|76570..76868|299 nt|1| | | |99 AA|99+12=111| | |
AMVLTQSAIFLSVQPGAPASISCRSS*SLES..YSYNFLSWYQQKPGQSPRLLIYFA...
....TNKASGVP.DRFSGSG..SGTDFTLKISRVEAEDAGVYYCQQNKESL
>FP312898|IGKV2-6*01|Sus scrofa|F|V-REGION|75179..75477|299 nt|1| | | |99 AA|99+12=111| | |
AIVLTQSPLSLSVSPGAPASISCRSSQSLES..YSYNFLSWYQQKPGQSPRLLIYFA...
....TNKASGVP.DRFSGSG..SGTDFTLKISRVEAEDAGVYYCQQNKESL
>CU694848|IGKV2-6*02|Sus scrofa|F|V-REGION|81969..82267|299 nt|1| | | |99 AA|99+12=111| |rev-compl|
AIVLTQTPLSLSVSPGEPASISCRSSQSLEE..YGSNLLSWYQQKPGQSPQLLIYGG...
....TNRASGVP.DRFSGSG..SGTDFTLKISRVEAEDAGVYYCQQNKESP
>FP312898|IGKV2-8*01|Sus scrofa|F|V-REGION|34713..35011|299 nt|1| | | |99 AA|99+12=111| | |
AIVLTQTPLSLSVSPGEPASISCRSSQSLEI..YGSNFLSWYQQKPGQSPQLLIYEA...
....TNRASGVP.DRFSGSG..SGTDFTLKISRVEAEDAGVYYCQQHKESP
>CU694848|IGKV2-8*02|Sus scrofa|F|V-REGION|96800..97101|302 nt|1| | | |100 AA|100+11=111| |rev-compl|
AIVLTQTPLSLSVSPGEPASISCRSSQSLVDS.DGDSLLHWYLQKPGQSPRLLFYFA...
....TNRASWVP.ERFSGSG..SGTDFTLKISRVEAEDAGVYYCQQYKEFP
>CU928807|IGKV2/OR3-1*01|Sus scrofa|P|V-REGION|155027..155328|302 nt|1| | | |100 AA|100+11=111| | |
AIVLTQTPLPLSVSPGEPVSISCKSSQSLLHR.GRNNYLHWYLQKPGQSLQNLIYYA...
....TNTASGVP.DRFSGSG..LGTDFTLKISSMEAEDVGVHYCQQSR*YP
>FP312898|IGKV2D-12*01|Sus scrofa|F|V-REGION|69018..69319|302 nt|1| | | |100 AA|100+11=111| |rev-compl|
AIVLTQTPLSLSVSPGEPASISCRSTQSLRGS.YGKNYLNWYQQKPGQSPKLLIYWA...
....TNRASGVP.DRFSGSR..SGTDFTLKIIRLEAEDAGVYYCLQDIQSP
>FP312898|IGKV3-3*01|Sus scrofa|ORF|V-REGION|90491..90780|290 nt|1| | | |96 AA|96+15=111| |rev-compl|
EIVLTQSAAPKAVSQEESVIITCNGSPGVS.....TNKLHWYQLKTGAPPRLLIYST...
....SSLAFWVP.TRFSGSG..SGTSYSRTISSVAAQDAADYYCQQSSSFP
>CU694848|IGKV3-3*02|Sus scrofa|ORF|V-REGION|69733..70022|290 nt|1| | | |96 AA|96+15=111| | |
EIVLTQSAASKAVSQGENVIITCNGSPGVS.....TNKLHWYQLKTGAPPRLLIYSK...
....SSLAFWVP.TRFSGSG..SGTSYSCTISSVAAQDAADYYCQQSSSFP
>FP312898|IGKV5-4*01|Sus scrofa|ORF|V-REGION|87500..87786|287 nt|1| | | |95 AA|95+16=111| | |
ETTVTQSPAFVSATPGDKVNITRKASQDI......DDDIMCYQQKPGEAPKLLIKYA...
....SIHITGVP.TRFSGSG..YGTDFTLTIGNMISEDATYYFCQQDDNVP
>CU694848|IGKV5-4*02|Sus scrofa|ORF|V-REGION|72204..72490|287 nt|1| | | |95 AA|95+16=111| |rev-compl|
ETTLTQSPAFVSATPGDKVNITRKASQDI......DDDIMCYQQKPGEAPRLLIKYA...
....SIHITGVP.TRFSGSG..YGTDFTLTIGNMISEDATYYFCQQDDNVP


Authors: Hugo Duvergey, Denis Moreno, Mansour Saljoqi, Véronique Giudicelli and Marie-Paule Lefranc

IMGT/GENE-DB scientific responsibles: Véronique Giudicelli (Veronique.Giudicelli@igh.cnrs.fr) and Marie-Paule Lefranc (Marie-Paule.Lefranc@igh.cnrs.fr)


-> IMGT/GENE-DB Documentation
-> IMGT/GENE-DB Query page
-> IMGT/GENE-DB direct links
-> IMGT/GENE-DB statistics
-> IMGT/GENE-DB program versions
-> IMGT/GENE-DB data updates

Software material and data coming from IMGT server may be used for academic research only, provided that it is referred to IMGT®, and cited as "IMGT®, the international ImMunoGeneTics information system® http://www.imgt.org (founder and director: Marie-Paule Lefranc, Montpellier, France)." References to cite: Lefranc, M.-P. et al., Nucleic Acids Research, 27, 209-212 (1999) Cover of NAR; Ruiz, M. et al., Nucleic Acids Research, 28, 219-221 (2000); Lefranc, M.-P., Nucleic Acids Research, 29, 207-209 (2001); Lefranc, M.-P., Nucleic Acids Res., 31, 307-310 (2003); Lefranc, M.-P. et al., In Silico Biol., 5, 0006 (2004) [Epub], 5, 45-60 (2005); Lefranc, M.-P. et al., Nucleic Acids Res., 33, D593-D597 (2005) Full text, Lefranc, M.-P. et al., Nucleic Acids Research 2009 37(Database issue): D1006-D1012; doi:10.1093/nar/gkn838 Full text.
For any other use please contact Marie-Paule Lefranc Marie-Paule.Lefranc@igh.cnrs.fr.

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