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IMGT®, the international ImMunoGeneTics information system® | http://www.imgt.org |
Citing IMGT/GENE-DB
: Giudicelli, V. et al. Nucleic Acids Res., 33: D256 - D261 (2005).
PMID: 15608191
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IMGT/GENE-DB program version: 3.1.21 (17 January 2019)
IMGT/GENE-DB data updates
The FASTA header contains 15 fields separated by '|': 1. IMGT/LIGM-DB accession number(s) 2. IMGT gene and allele name 3. species 4. IMGT allele functionality 5. exon(s), region name(s), or extracted label(s) 6. start and end positions in the IMGT/LIGM-DB accession number(s) 7. number of nucleotides in the IMGT/LIGM-DB accession number(s) 8. codon start, or 'NR' (not relevant) for non coding labels 9. +n: number of nucleotides (nt) added in 5' compared to the corresponding label extracted from IMGT/LIGM-DB 10. +n or -n: number of nucleotides (nt) added or removed in 3' compared to the corresponding label extracted from IMGT/LIGM-DB 11. +n, -n, and/or nS: number of added, deleted, and/or substituted nucleotides to correct sequencing errors, or 'not corrected' if non corrected sequencing errors 12. number of amino acids (AA): this field indicates that the sequence is in amino acids 13. number of characters in the sequence: nt (or AA)+IMGT gaps=total 14. partial (if it is) 15. reverse complementary (if it is)
>AABR03078283|IGLV1S1*01|Rattus norvegicus_BN/SsNHsdMCW|F|V-REGION|28839..29132|294 nt|1| | | |98 AA|98+14=112| | | QAVVTQESA.LTTLPGGTVTLTCHSSTGAVT...TSNYANWIQEKADHLFTGIVGDT... ....SNRAPGAP.ARFSGSL..LEGKAALTITGAQIEDEATYFCSLWYSNHF >AABR03078283|IGLV2S1*01|Rattus norvegicus_BN/SsNHsdMCW|F|V-REGION|65417..65719|303 nt|1| | | |101 AA|101+13=114| | | QFTLTQPKS.VSGSLRSTITIPCERSSGDI....GDSYVSWYQQHLGRPPINVIYAD... ....DQRPSEVS.DRFSGSIDSSSNSASLTITNLQMDDEADYFCQSYDSNIDIN >AABR03078283|IGLV3S1*01|Rattus norvegicus_BN/SsNHsdMCW|F|V-REGION|105325..105621|297 nt|1| | | |99 AA|99+13=112| | | QAVLTQPNS.VSTSLGSTVKLSCTLSSGNI....ENNYVHWYQQYEGRSPTTMIYND... ....DKRPDGVP.DRFSGSIDSSSNSAFLTINNVEIEDEAIYFCHSYVSSIN >AABR03078979|IGLV3S2*01|Rattus norvegicus_BN/SsNHsdMCW|F|V-REGION|23502..23798|297 nt|1| | | |99 AA|99+13=112| | | QFVLTQPNS.VSTNLGSTVKLSCKRSTGNI....GSNYVNWYQQHEGRSPTTMIYRD... ....DKRPDGVP.DRFSGSIDRSSNSALLTINNVQTEDEADYFCQSYSSGIN >AABR03078834|IGLV3S3*01|Rattus norvegicus_BN/SsNHsdMCW|F|V-REGION|21325..21621|297 nt|1| | | |99 AA|99+13=112| | | QFVLTQSNS.MSTSLGSTVKLSCKRSTGNI....GSSYVYWYQQHEGRSPTTMIYDD... ....DKRPDGVP.DRFSGSIDSSSNSAFLTINNVQIEDEAIYFCQSYSSGIN >AC109901|IGLV3S4*01|Rattus norvegicus_BN/SsNHsdMCW|F|V-REGION|137299..137595|297 nt|1| | ||99 AA|99+13=112| |rev-compl| QVVLTQPKS.VSTSLESTVKLSCKLNSGNI....GSYYIHWYQQHEGRSPTTMIYRD... ....DKRPDGVP.DRFSGSIDSSSNSAFLTINNVQTEDEAIYFCHSYDSSIN >AC109901|IGLV3S5*01|Rattus norvegicus_BN/SsNHsdMCW|F|V-REGION|122770..123066|297 nt|1| | ||99 AA|99+13=112| |rev-compl| QVVLTQPNT.VSTSLGITVKLSCKCSSGNI....GSYSVHWYQQHEGRSPTTMIYKD... ....DKRPDGVP.DRFSGSIDSSSNSAFLTINNVQTEDEAVYFCHSYDSNIN >AC133058|IGLV4S1*01|Rattus norvegicus|F|V-REGION|133011..133299|289 nt|1| | ||96 AA|96+17=113| | | SYELIQPPS.ASVTLGNTVSLTCVGDELS......KRYAQWYQQKPDKTIVSVIYKD... ....SERPSGIS.DRFSGS..SSGTTATLTIHGTLAEDEADYYCLSTYSDDNL
Authors: Hugo Duvergey, Denis Moreno, Mansour Saljoqi, Véronique Giudicelli and Marie-Paule Lefranc
IMGT/GENE-DB scientific responsibles: Véronique Giudicelli (Veronique.Giudicelli@igh.cnrs.fr) and Marie-Paule Lefranc (Marie-Paule.Lefranc@igh.cnrs.fr)
Software material and data coming from IMGT server may be used for academic research only,
provided that it is referred to IMGT®, and cited as
"IMGT®, the international ImMunoGeneTics information system®
http://www.imgt.org
(founder and director: Marie-Paule Lefranc, Montpellier, France)."
References to cite:
Lefranc, M.-P. et al.,
Nucleic Acids Research, 27, 209-212 (1999)
Cover of NAR;
Ruiz, M. et al.,
Nucleic Acids Research, 28, 219-221 (2000);
Lefranc, M.-P.,
Nucleic Acids Research, 29, 207-209 (2001);
Lefranc, M.-P.,
Nucleic Acids Res., 31, 307-310 (2003);
Lefranc, M.-P. et al.,
In Silico Biol., 5, 0006 (2004) [Epub],
5, 45-60 (2005);
Lefranc, M.-P. et al.,
Nucleic Acids Res., 33, D593-D597 (2005)
Full text,
Lefranc, M.-P. et al.,
Nucleic Acids Research 2009 37(Database issue): D1006-D1012; doi:10.1093/nar/gkn838
Full text.
For any other use please contact Marie-Paule Lefranc Marie-Paule.Lefranc@igh.cnrs.fr.
IMGT® Founder and Executive Director Emeritus:
Marie-Paule Lefranc
Marie-Paule.Lefranc@igh.cnrs.fr
IMGT® Director:
Sofia Kossida
Sofia.Kossida@igh.cnrs.fr
Bioinformatics manager:
Véronique Giudicelli
Veronique.Giudicelli@igh.cnrs.fr
Computer manager:
Patrice Duroux
Patrice.Duroux@igh.cnrs.fr
Webmaster:
Amélie Houles
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