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IMGT®, the international ImMunoGeneTics information system® | http://www.imgt.org |
Citing IMGT/GENE-DB
: Giudicelli, V. et al. Nucleic Acids Res., 33: D256 - D261 (2005).
PMID: 15608191
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IMGT/GENE-DB program version: 3.1.21 (17 January 2019)
IMGT/GENE-DB data updates
The FASTA header contains 15 fields separated by '|': 1. IMGT/LIGM-DB accession number(s) 2. IMGT gene and allele name 3. species 4. IMGT allele functionality 5. exon(s), region name(s), or extracted label(s) 6. start and end positions in the IMGT/LIGM-DB accession number(s) 7. number of nucleotides in the IMGT/LIGM-DB accession number(s) 8. codon start, or 'NR' (not relevant) for non coding labels 9. +n: number of nucleotides (nt) added in 5' compared to the corresponding label extracted from IMGT/LIGM-DB 10. +n or -n: number of nucleotides (nt) added or removed in 3' compared to the corresponding label extracted from IMGT/LIGM-DB 11. +n, -n, and/or nS: number of added, deleted, and/or substituted nucleotides to correct sequencing errors, or 'not corrected' if non corrected sequencing errors 12. number of amino acids (AA): this field indicates that the sequence is in amino acids 13. number of characters in the sequence: nt (or AA)+IMGT gaps=total 14. partial (if it is) 15. reverse complementary (if it is)
>FP312898|IGKV1-11*01|Sus scrofa|F|V-REGION|15192..15478|287 nt|1| | | |95 AA|95+16=111| | | AIQLTQSPASLAASLGDTVSITCRASQSI......NKWLAWYQQQAGKAPKLLIYSA... ....STLQSGVP.SRFKGSG..SGTDFTLTISGLQAEDVATYYCQQHHSAP >CU694848|IGKV1-11*02|Sus scrofa|F|V-REGION|115750..116036|287 nt|1| | | |95 AA|95+16=111| |rev-compl| AIQLTQSPASLAASLGDTVSITCRASQSI......NKWLAWYQQQPGKAPKLLIYSA... ....STLQSGVP.CGFKGSG..SGTDFTLTISGLQAEDVATYYCQQHHSAP >FP312898|IGKV1-14*01|Sus scrofa|F|V-REGION|48786..49072|287 nt|1| | | |95 AA|95+16=111| |rev-compl| AIQLTQSPASLAASLGDTVSITCRARQSI......SSYLAWYQQQPGKTPKLLFYDA... ....CTLQSGVP.CGFKGSG..SGTHFTVTISGLQAEDVATYYCQQLNNAP >FP312898|IGKV1-7*01|Sus scrofa|F|V-REGION|42163..42449|287 nt|1| | | |95 AA|95+16=111| | | AIQLTQSPASLAASLGDTVSITCRAHQTI......SSYLAWYQQQPGKPPKLLLCDA... ....CTLQSGVP.CGFKGSG..SGTHFTLTISGLQAEDVATYYCQQLNNAP >CU694848|IGKV1-7*02|Sus scrofa|F|V-REGION|87991..88277|287 nt|1| | | |95 AA|95+16=111| |rev-compl| AIQLTQSPASLAASLGDTVSITCRARQSI......SSYLAWYQQQPGKPPKLLLCDA... ....CTLQSGVP.CGFKGSG..SGTHFTVTISGLQAEDVATYYCQQLNNAP >FP312898|IGKV1-9*01|Sus scrofa|F|V-REGION|24916..25202|287 nt|1| | | |95 AA|95+16=111| | | AIQLTQSPASLAASLGDTVSITCRASQSV......SNNLAWYQQQAGKPPKLLIYWA... ....SALQSGVP.SRFKGSV..SGTDFTLTISGLQAEDVATYYCQQLNSAP >CU694848|IGKV1-9*02|Sus scrofa|F|V-REGION|106011..106297|287 nt|1| | | |95 AA|95+16=111| |rev-compl| AIQMTQSPASLAASLGDTVSITCRASQSV......SNNLAWYQQQAGKAPKLLIYWA... ....STLQSGVP.SRFKGSV..SGTDFTLTISGLQAEDVATYSCQQLNSAP >FP312898|IGKV1D-11*01|Sus scrofa|F|V-REGION|60631..60917|287 nt|1| | | |95 AA|95+16=111| |rev-compl| AIQLTQSPASLAASLGDTVSITCRASQSI......NKWLAWYQQQAGKAPKLLIYSA... ....STLQSGVP.SRFKGSG..SGTDFTLTISGLQAEDVATYYCQQHHSAP >FP312898|IGKV2-10*01|Sus scrofa|F|V-REGION|21360..21661|302 nt|1| | | |100 AA|100+11=111| | | AIVLTQTPLSLSVSPGEPASISCRSSQSLVDS.DGDSLLHWYLQKPGQSPQLLIYEA... ....TNRASGVP.DRFSGSG..SGTDFTLKISRVEAEDVGVYYCFQALQSP >CU694848|IGKV2-10*02|Sus scrofa|F|V-REGION|109560..109861|302 nt|1| | | |100 AA|100+11=111| |rev-compl| AIVLTQTPLSLSVSPGEPASISCRSSQSLLHT.DGKNYLNWYLQKPGQSPQRLIYQA... ....TNRDTGVP.DRFSGSG..SGTDFTLKISRVEAEDVGVYYCFQALQSP >FP312898|IGKV2-12*01|Sus scrofa|F|V-REGION|6765..7066|302 nt|1| | | |100 AA|100+11=111| | | AIVLTQTPLSLSVSPGEPASISCRSTQSLRGS.YGKNYLNWYQQKPGQSPKLLIYWA... ....TNRASGVP.DRFSGSR..SGTDFTLKIIRLEAEDAGVYSCLQDIQSP >CU694848|IGKV2-12*02|Sus scrofa|F|V-REGION|124132..124433|302 nt|1| | | |100 AA|100+11=111| |rev-compl| AIVLTQTPLSLSVSPGEPASISCRSTQSLRGS.YGKNYLNWYLQKPGQSPKLLIYWA... ....TNRASGVP.GRFSGSR..SGTDFTLKIIRLEAEDAGVYYCLQDIQSP >FP312898|IGKV2-13*01|Sus scrofa|F|V-REGION|56532..56830|299 nt|1| | | |99 AA|99+12=111| |rev-compl| AIVLTQTPLSLSVSPGEPASISCRSSQSLEI..YGNNFLSWYQQKPGQSPQLLIYEA... ....TNRASGVP.DRFSGSG..SGTDFTLKISRVEAEDAGVYYCQQNKESL >CU694848|IGKV2-13*02|Sus scrofa|F|V-REGION|4457..4755|299 nt|1| | | |99 AA|99+12=111| | | AIVLTQTPLSLSVSPGEPASISCRSSQSLEE..YGSNLLSWYQQKPGQSPQLLIYEA... ....TNRASGVP.DRFSGSG..SGTDFTLKISRVEAEDAGVYYCQQFKEFP >FP312898|IGKV2-5*01|Sus scrofa|P|V-REGION|76570..76868|299 nt|1| | | |99 AA|99+12=111| | | AMVLTQSAIFLSVQPGAPASISCRSS*SLES..YSYNFLSWYQQKPGQSPRLLIYFA... ....TNKASGVP.DRFSGSG..SGTDFTLKISRVEAEDAGVYYCQQNKESL >FP312898|IGKV2-6*01|Sus scrofa|F|V-REGION|75179..75477|299 nt|1| | | |99 AA|99+12=111| | | AIVLTQSPLSLSVSPGAPASISCRSSQSLES..YSYNFLSWYQQKPGQSPRLLIYFA... ....TNKASGVP.DRFSGSG..SGTDFTLKISRVEAEDAGVYYCQQNKESL >CU694848|IGKV2-6*02|Sus scrofa|F|V-REGION|81969..82267|299 nt|1| | | |99 AA|99+12=111| |rev-compl| AIVLTQTPLSLSVSPGEPASISCRSSQSLEE..YGSNLLSWYQQKPGQSPQLLIYGG... ....TNRASGVP.DRFSGSG..SGTDFTLKISRVEAEDAGVYYCQQNKESP >FP312898|IGKV2-8*01|Sus scrofa|F|V-REGION|34713..35011|299 nt|1| | | |99 AA|99+12=111| | | AIVLTQTPLSLSVSPGEPASISCRSSQSLEI..YGSNFLSWYQQKPGQSPQLLIYEA... ....TNRASGVP.DRFSGSG..SGTDFTLKISRVEAEDAGVYYCQQHKESP >CU694848|IGKV2-8*02|Sus scrofa|F|V-REGION|96800..97101|302 nt|1| | | |100 AA|100+11=111| |rev-compl| AIVLTQTPLSLSVSPGEPASISCRSSQSLVDS.DGDSLLHWYLQKPGQSPRLLFYFA... ....TNRASWVP.ERFSGSG..SGTDFTLKISRVEAEDAGVYYCQQYKEFP >CU928807|IGKV2/OR3-1*01|Sus scrofa|P|V-REGION|155027..155328|302 nt|1| | | |100 AA|100+11=111| | | AIVLTQTPLPLSVSPGEPVSISCKSSQSLLHR.GRNNYLHWYLQKPGQSLQNLIYYA... ....TNTASGVP.DRFSGSG..LGTDFTLKISSMEAEDVGVHYCQQSR*YP >FP312898|IGKV2D-12*01|Sus scrofa|F|V-REGION|69018..69319|302 nt|1| | | |100 AA|100+11=111| |rev-compl| AIVLTQTPLSLSVSPGEPASISCRSTQSLRGS.YGKNYLNWYQQKPGQSPKLLIYWA... ....TNRASGVP.DRFSGSR..SGTDFTLKIIRLEAEDAGVYYCLQDIQSP >FP312898|IGKV3-3*01|Sus scrofa|ORF|V-REGION|90491..90780|290 nt|1| | | |96 AA|96+15=111| |rev-compl| EIVLTQSAAPKAVSQEESVIITCNGSPGVS.....TNKLHWYQLKTGAPPRLLIYST... ....SSLAFWVP.TRFSGSG..SGTSYSRTISSVAAQDAADYYCQQSSSFP >CU694848|IGKV3-3*02|Sus scrofa|ORF|V-REGION|69733..70022|290 nt|1| | | |96 AA|96+15=111| | | EIVLTQSAASKAVSQGENVIITCNGSPGVS.....TNKLHWYQLKTGAPPRLLIYSK... ....SSLAFWVP.TRFSGSG..SGTSYSCTISSVAAQDAADYYCQQSSSFP >FP312898|IGKV5-4*01|Sus scrofa|ORF|V-REGION|87500..87786|287 nt|1| | | |95 AA|95+16=111| | | ETTVTQSPAFVSATPGDKVNITRKASQDI......DDDIMCYQQKPGEAPKLLIKYA... ....SIHITGVP.TRFSGSG..YGTDFTLTIGNMISEDATYYFCQQDDNVP >CU694848|IGKV5-4*02|Sus scrofa|ORF|V-REGION|72204..72490|287 nt|1| | | |95 AA|95+16=111| |rev-compl| ETTLTQSPAFVSATPGDKVNITRKASQDI......DDDIMCYQQKPGEAPRLLIKYA... ....SIHITGVP.TRFSGSG..YGTDFTLTIGNMISEDATYYFCQQDDNVP
Authors: Hugo Duvergey, Denis Moreno, Mansour Saljoqi, Véronique Giudicelli and Marie-Paule Lefranc
IMGT/GENE-DB scientific responsibles: Véronique Giudicelli (Veronique.Giudicelli@igh.cnrs.fr) and Marie-Paule Lefranc (Marie-Paule.Lefranc@igh.cnrs.fr)
Software material and data coming from IMGT server may be used for academic research only,
provided that it is referred to IMGT®, and cited as
"IMGT®, the international ImMunoGeneTics information system®
http://www.imgt.org
(founder and director: Marie-Paule Lefranc, Montpellier, France)."
References to cite:
Lefranc, M.-P. et al.,
Nucleic Acids Research, 27, 209-212 (1999)
Cover of NAR;
Ruiz, M. et al.,
Nucleic Acids Research, 28, 219-221 (2000);
Lefranc, M.-P.,
Nucleic Acids Research, 29, 207-209 (2001);
Lefranc, M.-P.,
Nucleic Acids Res., 31, 307-310 (2003);
Lefranc, M.-P. et al.,
In Silico Biol., 5, 0006 (2004) [Epub],
5, 45-60 (2005);
Lefranc, M.-P. et al.,
Nucleic Acids Res., 33, D593-D597 (2005)
Full text,
Lefranc, M.-P. et al.,
Nucleic Acids Research 2009 37(Database issue): D1006-D1012; doi:10.1093/nar/gkn838
Full text.
For any other use please contact Marie-Paule Lefranc Marie-Paule.Lefranc@igh.cnrs.fr.
IMGT® Founder and Executive Director Emeritus:
Marie-Paule Lefranc
Marie-Paule.Lefranc@igh.cnrs.fr
IMGT® Director:
Sofia Kossida
Sofia.Kossida@igh.cnrs.fr
Bioinformatics manager:
Véronique Giudicelli
Veronique.Giudicelli@igh.cnrs.fr
Computer manager:
Patrice Duroux
Patrice.Duroux@igh.cnrs.fr
Webmaster:
Amélie Houles
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