BAG publications
Falush D, Bowden R (2006) Genome-wide association mapping in bacteria? Trends Microbiol 14(8): 353-355.
Griffiths D, Fawley W, Kachrimanidou M, Bowden R, Crook DW, Fung R, Golubchik T, Harding RM, Jeffery KJ, Jolley KA, Kirton R, Peto TE, Rees G, Stoesser N, Vaughan A, Walker AS, Young BC, Wilcox M, Dingle KE (2010) Multilocus sequence typing of Clostridium difficile. J Clin Microbiol 48(3): 770-778.
Didelot X, Bowden R, Street T, Golubchik T, Spencer C, McVean G, Sangal V, Anjum MF, Achtman M, Falush D, Donnelly P (2011) Recombination and Population Structure in Salmonella enterica. PLoS Genet 7(7): e1002191.
Golubchik T, Brueggemann AB, Street T, Gertz RE, Spencer CCA, Ho T, Giannoulatou E, Link-Gelles R, Harding RM, Beall B, Peto TEA, Moore MR, Donnelly P, Crook DW, Bowden R (2012) Pneumococcal genome sequencing tracks a vaccine escape variant formed through a multi-fragment recombination event. Nat Genet 44.
Young BC, Golubchik T, Batty EM, Fung R, Larner-Svensson H, Votintseva A, Miller RR, Godwin H, Knox K, Everitt RG, Iqbal Z, Rimmer AJ, Cule M, Ip CLC, Didelot X, Harding RM, Donnelly PD, Peto TEA, Crook DWM, Bowden R, Wilson D (In Press) Evolutionary dynamics of Staphylococcus aureus during progression from carriage to disease. PNAS.
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