* using log directory ‘/data/gannet/ripley/R/packages/tests-Suggests/proxyC.Rcheck’
* using R Under development (unstable) (2024-04-11 r86406)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-13 (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Fedora Linux 36 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘proxyC/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘proxyC’ version ‘0.4.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘proxyC’ can be installed ... [136s/140s] OK
* used C++ compiler: ‘g++-13 (GCC) 13.2.0’
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [14s/29s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [8s/22s]
 [9s/23s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > require(proxyC)
  Loading required package: proxyC
  
  Attaching package: 'proxyC'
  
  The following object is masked from 'package:stats':
  
      dist
  
  > require(testthat)
  Loading required package: testthat
  > test_check("proxyC")
  [ FAIL 1 | WARN 0 | SKIP 18 | PASS 204 ]
  
  ══ Skipped tests (18) ══════════════════════════════════════════════════════════
  • entropy cannot be loaded (3): 'test-dist.R:40:5', 'test-dist.R:55:5',
    'test-dist.R:73:5'
  • proxy cannot be loaded (15): 'test-dist.R:4:5', 'test-dist.R:10:5',
    'test-dist.R:16:5', 'test-dist.R:22:5', 'test-dist.R:32:5',
    'test-simil.R:25:5', 'test-simil.R:31:5', 'test-simil.R:37:5',
    'test-simil.R:44:5', 'test-simil.R:51:5', 'test-simil.R:65:5',
    'test-simil.R:72:5', 'test-simil.R:79:5', 'test-simil.R:85:5',
    'test-simil.R:91:5'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-dist.R:108:5'): test jensen shannon distance ───────────────────
  <packageNotFoundError/error/condition>
  Error in `loadNamespace(x)`: there is no package called 'entropy'
  Backtrace:
      ▆
   1. ├─testthat::expect_equal(d1, entropy::KL.empirical(p1, m)) at test-dist.R:108:5
   2. │ └─testthat::quasi_label(enquo(expected), expected.label, arg = "expected")
   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
   4. └─base::loadNamespace(x)
   5.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   6.     └─base (local) withOneRestart(expr, restarts[[1L]])
   7.       └─base (local) doWithOneRestart(return(expr), restart)
  
  [ FAIL 1 | WARN 0 | SKIP 18 | PASS 204 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... [7s/22s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/gannet/ripley/R/packages/tests-Suggests/proxyC.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 6:35.14, 209.91 + 23.53