* using log directory ‘/data/gannet/ripley/R/packages/tests-Suggests/genekitr.Rcheck’
* using R Under development (unstable) (2024-04-19 r86451)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-13 (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Fedora Linux 36 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘genekitr/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘genekitr’ version ‘1.2.5’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package suggested but not available for checking: ‘rrvgo’
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘genekitr’ can be installed ... [55s/74s] OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [17s/21s] OK
* checking whether the package can be loaded with stated dependencies ... [15s/19s] OK
* checking whether the package can be unloaded cleanly ... [15s/18s] OK
* checking whether the namespace can be loaded with stated dependencies ... [16s/20s] OK
* checking whether the namespace can be unloaded cleanly ... [17s/23s] OK
* checking loading without being on the library search path ... [15s/31s] OK
* checking whether startup messages can be suppressed ... [17s/27s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [82s/100s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [17s/22s] ERROR
Running examples in ‘genekitr-Ex.R’ failed
The error most likely occurred in:

> ### Name: plotVenn
> ### Title: Venn plot for groups of genes
> ### Aliases: plotVenn
> 
> ### ** Examples
> 
> library(ggplot2)
> set1 <- paste0(rep("gene", 30), sample(1:1000, 30))
> set2 <- paste0(rep("gene", 40), sample(1:1000, 40))
> set3 <- paste0(rep("gene", 50), sample(1:1000, 50))
> set4 <- paste0(rep("gene", 60), sample(1:1000, 60))
> set5 <- paste0(rep("gene", 70), sample(1:1000, 70))
> sm_gene_list <- list(gset1 = set1, gset2 = set2, gset3 = set3)
> la_gene_list <- list(
+   gset1 = set1, gset2 = set2, gset3 = set3,
+   gset4 = set4, gset5 = set5
+ )
> plotVenn(sm_gene_list,
+   use_venn = TRUE,
+   color = ggsci::pal_lancet()(3),
+   alpha_degree = 0.5,
+   main_text_size = 3,
+   border_thick = 0,
+   venn_percent = TRUE
+ )
Error in loadNamespace(x) : there is no package called ‘ggsci’
Calls: plotVenn ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
* checking PDF version of manual ... [8s/11s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR, 1 NOTE
See
  ‘/data/gannet/ripley/R/packages/tests-Suggests/genekitr.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 10:31.91, 430.01 + 40.79