* using log directory ‘/data/gannet/ripley/R/packages/tests-Suggests/MARVEL.Rcheck’
* using R Under development (unstable) (2024-04-19 r86451)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-13 (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Fedora Linux 36 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘MARVEL/DESCRIPTION’ ... OK
* this is package ‘MARVEL’ version ‘1.4.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Packages suggested but not available for checking:
  'BSgenome.Hsapiens.NCBI.GRCh38', 'org.Hs.eg.db', 'org.Mm.eg.db'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MARVEL’ can be installed ... [40s/76s] OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [85s/117s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘MARVEL-Ex.R’ failed
The error most likely occurred in:

> ### Name: BioPathways.Plot.10x
> ### Title: Plot pathway enrichment analysis results
> ### Aliases: BioPathways.Plot.10x
> 
> ### ** Examples
> 
> 
> marvel.demo.10x <- readRDS(system.file("extdata/data",
+                                "marvel.demo.10x.rds",
+                                package="MARVEL")
+                                )
> 
> # Define top pathways to plot
> go.terms <- marvel.demo.10x$DE$BioPathways$Table$Description
> go.terms <- go.terms[c(1:10)]
> 
> # Plot
> marvel.demo.10x <- BioPathways.Plot.10x(
+                             MarvelObject=marvel.demo.10x,
+                             go.terms=go.terms
+                             )
Error in loadNamespace(x) : there is no package called ‘stringr’
Calls: BioPathways.Plot.10x ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... [17s/24s] OK
* checking HTML version of manual ... [6s/11s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR, 1 NOTE
See
  ‘/data/gannet/ripley/R/packages/tests-Suggests/MARVEL.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 6:43.40, 248.30 + 19.15