* installing *source* package ‘zonohedra’ ...
** package ‘zonohedra’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (GCC) 13.2.0’
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-noRemap/zonohedra/src'
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c collapse.c -o collapse.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c dbl_dig.c -o dbl_dig.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c dupAtomMatHash.cpp -o dupAtomMatHash.o
In file included from rcVec.h:1,
                 from rcSetHash.h:5,
                 from dupAtomMatHash.cpp:38:
CharSEXP.h: In constructor 'CharSEXP::CharSEXP(SEXP)':
CharSEXP.h:27:30: error: 'error' was not declared in this scope; did you mean 'perror'?
   27 |                         else error("CharSEXP should be initialized with a CHARSXP type object");
      |                              ^~~~~
      |                              perror
dupAtomMatHash.cpp: In function 'SEXPREC* dupAtomMatHash(SEXP, SEXP, SEXP)':
dupAtomMatHash.cpp:62:21: error: 'getAttrib' was not declared in this scope; did you mean 'Rf_getAttrib'?
   62 |         dim=INTEGER(getAttrib(x, R_DimSymbol));
      |                     ^~~~~~~~~
      |                     Rf_getAttrib
In file included from CharSEXP.h:6:
dupAtomMatHash.cpp:63:23: error: 'allocVector' was not declared in this scope; did you mean 'Rf_allocVector'?
   63 |         out = PROTECT(allocVector(LGLSXP, dim[*INTEGER(MARGIN)-1]));
      |                       ^~~~~~~~~~~
/data/gannet/ripley/R/R-devel/include/Rinternals.h:371:36: note: in definition of macro 'PROTECT'
  371 | #define PROTECT(s)      Rf_protect(s)
      |                                    ^
dupAtomMatHash.cpp:94:25: error: 'error' was not declared in this scope; did you mean 'perror'?
   94 |                         error("C function 'dupAtomMatHash' only accepts REALSXP, LGLSXP, INTSXP and STRSXP");
      |                         ^~~~~
      |                         perror
dupAtomMatHash.cpp: In function 'SEXPREC* anyDupAtomMatHash(SEXP, SEXP, SEXP)':
dupAtomMatHash.cpp:107:21: error: 'getAttrib' was not declared in this scope; did you mean 'Rf_getAttrib'?
  107 |         dim=INTEGER(getAttrib(x, R_DimSymbol));
      |                     ^~~~~~~~~
      |                     Rf_getAttrib
dupAtomMatHash.cpp:108:23: error: 'allocVector' was not declared in this scope; did you mean 'Rf_allocVector'?
  108 |         out = PROTECT(allocVector(INTSXP, 1));
      |                       ^~~~~~~~~~~
/data/gannet/ripley/R/R-devel/include/Rinternals.h:371:36: note: in definition of macro 'PROTECT'
  371 | #define PROTECT(s)      Rf_protect(s)
      |                                    ^
dupAtomMatHash.cpp:139:25: error: 'error' was not declared in this scope; did you mean 'perror'?
  139 |                         error("C function 'anyDupAtomMatHash' only accepts REALSXP, LGLSXP, INTSXP and STRSXP");
      |                         ^~~~~
      |                         perror
dupAtomMatHash.cpp: In function 'SEXPREC* grpDupAtomMatHash(SEXP, SEXP)':
dupAtomMatHash.cpp:150:32: error: 'getAttrib' was not declared in this scope; did you mean 'Rf_getAttrib'?
  150 |         int     *dim = INTEGER(getAttrib(x, R_DimSymbol));
      |                                ^~~~~~~~~
      |                                Rf_getAttrib
dupAtomMatHash.cpp:151:32: error: 'allocVector' was not declared in this scope; did you mean 'Rf_allocVector'?
  151 |         SEXP    out = PROTECT( allocVector(INTSXP, dim[*INTEGER(MARGIN)-1]) );
      |                                ^~~~~~~~~~~
/data/gannet/ripley/R/R-devel/include/Rinternals.h:371:36: note: in definition of macro 'PROTECT'
  371 | #define PROTECT(s)      Rf_protect(s)
      |                                    ^
dupAtomMatHash.cpp:185:25: error: 'error' was not declared in this scope; did you mean 'perror'?
  185 |                         error( "C function 'grpDupAtomMatHash' only accepts REALSXP, LGLSXP, INTSXP, STRSXP, CPLXSXP, and RAWSXP.");
      |                         ^~~~~
      |                         perror
dupAtomMatHash.cpp:189:9: error: 'error' was not declared in this scope; did you mean 'perror'?
  189 |         error( "C function 'grpDupAtomMatHash' unexpected failure !" );
      |         ^~~~~
      |         perror
dupAtomMatHash.cpp:196:20: error: 'install' was not declared in this scope
  196 |     setAttrib(out, install("ngroups"), nGroups);
      |                    ^~~~~~~
dupAtomMatHash.cpp:196:5: error: 'setAttrib' was not declared in this scope; did you mean 'Rf_setAttrib'?
  196 |     setAttrib(out, install("ngroups"), nGroups);
      |     ^~~~~~~~~
      |     Rf_setAttrib
make[2]: *** [/data/gannet/ripley/R/R-devel/etc/Makeconf:202: dupAtomMatHash.o] Error 1
make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-noRemap/zonohedra/src'
ERROR: compilation failed for package ‘zonohedra’
* removing ‘/data/gannet/ripley/R/packages/tests-noRemap/Libs/zonohedra-lib/zonohedra’
Command exited with non-zero status 1
Time 0:04.44, 3.43 + 0.80