* installing *source* package ‘yaImpute’ ...
** package ‘yaImpute’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (GCC) 13.2.0’
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-noRemap/yaImpute/src'
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c ANN.cpp -o ANN.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c annImpute.cpp -o annImpute.o
In file included from annImpute.cpp:10:
annImpute.cpp: In function 'SEXPREC* annf(SEXP)':
annImpute.cpp:47:23: error: 'getAttrib' was not declared in this scope; did you mean 'Rf_getAttrib'?
   47 |     PROTECT(refDims = getAttrib(ref, R_DimSymbol)); nProtect++;
      |                       ^~~~~~~~~
/data/gannet/ripley/R/R-devel/include/Rinternals.h:371:36: note: in definition of macro 'PROTECT'
  371 | #define PROTECT(s)      Rf_protect(s)
      |                                    ^
annImpute.cpp:89:31: error: 'allocMatrix' was not declared in this scope; did you mean 'Rf_allocMatrix'?
   89 |     PROTECT(knnIndxDistMtrx = allocMatrix(REALSXP, tarDim1, k+k)); nProtect++;
      |                               ^~~~~~~~~~~
/data/gannet/ripley/R/R-devel/include/Rinternals.h:371:36: note: in definition of macro 'PROTECT'
  371 | #define PROTECT(s)      Rf_protect(s)
      |                                    ^
annImpute.cpp:180:20: error: 'allocVector' was not declared in this scope; did you mean 'Rf_allocVector'?
  180 |     PROTECT(time = allocVector(REALSXP, 1)); nProtect++;
      |                    ^~~~~~~~~~~
/data/gannet/ripley/R/R-devel/include/Rinternals.h:371:36: note: in definition of macro 'PROTECT'
  371 | #define PROTECT(s)      Rf_protect(s)
      |                                    ^
annImpute.cpp:189:36: error: 'mkChar' was not declared in this scope
  189 |     SET_STRING_ELT(resultNames, 0, mkChar("knnIndexDist"));
      |                                    ^~~~~~
annImpute.cpp:191:5: error: 'namesgets' was not declared in this scope; did you mean 'Rf_namesgets'?
  191 |     namesgets(result, resultNames);
      |     ^~~~~~~~~
      |     Rf_namesgets
make[2]: *** [/data/gannet/ripley/R/R-devel/etc/Makeconf:202: annImpute.o] Error 1
make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-noRemap/yaImpute/src'
ERROR: compilation failed for package ‘yaImpute’
* removing ‘/data/gannet/ripley/R/packages/tests-noRemap/Libs/yaImpute-lib/yaImpute’
Command exited with non-zero status 1
Time 0:04.78, 4.08 + 0.53