Warning: unknown option ‘--no-vignettes’ * installing *source* package ‘tgp’ ... ** package ‘tgp’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (GCC) 13.2.0’ using C++ compiler: ‘g++-13 (GCC) 13.2.0’ make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-noRemap/tgp/src' gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DRPRINT -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c all_draws.c -o all_draws.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DRPRINT -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c base.cc -o base.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DRPRINT -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c corr.cc -o corr.o gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DRPRINT -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c dopt.c -o dopt.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DRPRINT -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c exp.cc -o exp.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DRPRINT -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c exp_sep.cc -o exp_sep.o gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DRPRINT -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c gen_covar.c -o gen_covar.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DRPRINT -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c gp.cc -o gp.o gp.cc: In member function 'virtual void Gp::Predict(unsigned int, double*, double*, double*, double*, unsigned int, double*, double*, double*, double*, double**, double*, double, bool, void*)': gp.cc:438:12: error: 'warning' was not declared in this scope; did you mean 'Rf_warning'? 438 | if(warn) warning("(%d) from predict_full: n=%d, nn=%d", warn, n, nn); | ^~~~~~~ | Rf_warning gp.cc: In member function 'virtual void Gp::X_to_F(unsigned int, double**, double**)': gp.cc:828:12: error: 'error' was not declared in this scope; did you mean 'perror'? 828 | default: error("bad mean function in X to F"); | ^~~~~ | perror gp.cc: In constructor 'Gp_Prior::Gp_Prior(unsigned int, MEAN_FN)': gp.cc:1009:12: error: 'error' was not declared in this scope; did you mean 'perror'? 1009 | default: error("unrecognized mean function: %d", mean_fn); | ^~~~~ | perror gp.cc: In member function 'virtual void Gp_Prior::read_double(double*)': gp.cc:1211:12: error: 'error' was not declared in this scope; did you mean 'perror'? 1211 | default: error("bad linear prior model %d", (int)dparams[0]); break; | ^~~~~ | perror gp.cc:1295:12: error: 'error' was not declared in this scope; did you mean 'perror'? 1295 | default: error("bad corr model %d", (int)dparams[0]); | ^~~~~ | perror gp.cc: In member function 'virtual void Gp_Prior::read_ctrlfile(std::ifstream*)': gp.cc:1320:5: error: 'error' was not declared in this scope; did you mean 'perror'? 1320 | error("col should be d+1 for linear mean function"); | ^~~~~ | perror gp.cc:1322:5: error: 'error' was not declared in this scope; did you mean 'perror'? 1322 | error("col should be 1 for constant mean function"); | ^~~~~ | perror gp.cc:1346:5: error: 'error' was not declared in this scope; did you mean 'perror'? 1346 | error("%s is not a valid beta prior", strtok(line, "\t\n#")); | ^~~~~ | perror gp.cc:1430:5: error: 'error' was not declared in this scope; did you mean 'perror'? 1430 | error("%s is not a valid correlation model", strtok(line, "\t\n#")); | ^~~~~ | perror gp.cc: In member function 'void Gp_Prior::read_beta(char*)': gp.cc:1512:7: error: 'error' was not declared in this scope; did you mean 'perror'? 1512 | error("not enough beta coefficients (%d)\n, there should be (%d)", | ^~~~~ | perror gp.cc: In member function 'virtual void Gp_Prior::Print(FILE*)': gp.cc:1696:12: error: 'error' was not declared in this scope; did you mean 'perror'? 1696 | default: error("mean function not recognized"); break; | ^~~~~ | perror gp.cc:1706:12: error: 'error' was not declared in this scope; did you mean 'perror'? 1706 | default: error("beta prior not supported"); break; | ^~~~~ | perror make[2]: *** [/data/gannet/ripley/R/R-devel/etc/Makeconf:200: gp.o] Error 1 make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-noRemap/tgp/src' ERROR: compilation failed for package ‘tgp’ * removing ‘/data/gannet/ripley/R/packages/tests-noRemap/Libs/tgp-lib/tgp’ Command exited with non-zero status 1 Time 0:14.49, 12.02 + 1.12