* installing *source* package ‘spNNGP’ ...
** package ‘spNNGP’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-noRemap/spNNGP/src'
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c PGLogit.cpp -o PGLogit.o
In file included from PGLogit.cpp:12:
PGLogit.cpp: In function 'SEXPREC* PGLogit(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
PGLogit.cpp:76:29: error: 'allocMatrix' was not declared in this scope; did you mean 'Rf_allocMatrix'?
   76 |     PROTECT(betaSamples_r = allocMatrix(REALSXP, p, nSamples)); nProtect++;
      |                             ^~~~~~~~~~~
/data/gannet/ripley/R/R-devel/include/Rinternals.h:371:36: note: in definition of macro 'PROTECT'
  371 | #define PROTECT(s)      Rf_protect(s)
      |                                    ^
PGLogit.cpp:115:75: error: 'error' was not declared in this scope; did you mean 'perror'?
  115 |       F77_NAME(dpotrf)(lower, &p, tmp_pp, &p, &info FCONE); if(info != 0){error("c++ error: dpotrf here failed\n");}
      |                                                                           ^~~~~
      |                                                                           perror
PGLogit.cpp:116:75: error: 'error' was not declared in this scope; did you mean 'perror'?
  116 |       F77_NAME(dpotri)(lower, &p, tmp_pp, &p, &info FCONE); if(info != 0){error("c++ error: dpotri here failed\n");}
      |                                                                           ^~~~~
      |                                                                           perror
PGLogit.cpp:118:75: error: 'error' was not declared in this scope; did you mean 'perror'?
  118 |       F77_NAME(dpotrf)(lower, &p, tmp_pp, &p, &info FCONE); if(info != 0){error("c++ error: dpotrf here failed\n");}
      |                                                                           ^~~~~
      |                                                                           perror
PGLogit.cpp:133:24: error: 'allocVector' was not declared in this scope; did you mean 'Rf_allocVector'?
  133 |     PROTECT(result_r = allocVector(VECSXP, nResultListObjs)); nProtect++;
      |                        ^~~~~~~~~~~
/data/gannet/ripley/R/R-devel/include/Rinternals.h:371:36: note: in definition of macro 'PROTECT'
  371 | #define PROTECT(s)      Rf_protect(s)
      |                                    ^
PGLogit.cpp:137:37: error: 'mkChar' was not declared in this scope
  137 |     SET_VECTOR_ELT(resultName_r, 0, mkChar("p.beta.samples"));
      |                                     ^~~~~~
PGLogit.cpp:139:5: error: 'namesgets' was not declared in this scope; did you mean 'Rf_namesgets'?
  139 |     namesgets(result_r, resultName_r);
      |     ^~~~~~~~~
      |     Rf_namesgets
PGLogit.cpp:27:18: warning: unused variable 'negOne' [-Wunused-variable]
   27 |     const double negOne = -1.0;
      |                  ^~~~~~
make[2]: *** [/data/gannet/ripley/R/R-devel/etc/Makeconf:202: PGLogit.o] Error 1
make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-noRemap/spNNGP/src'
ERROR: compilation failed for package ‘spNNGP’
* removing ‘/data/gannet/ripley/R/packages/tests-noRemap/Libs/spNNGP-lib/spNNGP’
Command exited with non-zero status 1
Time 0:02.16, 1.70 + 0.26