* installing *source* package ‘spAbundance’ ... ** package ‘spAbundance’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-13 (GCC) 13.2.0’ make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-noRemap/spAbundance/src' g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c DS.cpp -o DS.o In file included from DS.cpp:12: DS.cpp: In function 'SEXPREC* DS(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': DS.cpp:186:29: error: 'allocMatrix' was not declared in this scope; did you mean 'Rf_allocMatrix'? 186 | PROTECT(betaSamples_r = allocMatrix(REALSXP, pAbund, nPost)); nProtect++; | ^~~~~~~~~~~ /data/gannet/ripley/R/R-devel/include/Rinternals.h:371:36: note: in definition of macro 'PROTECT' 371 | #define PROTECT(s) Rf_protect(s) | ^ DS.cpp:840:24: error: 'allocVector' was not declared in this scope; did you mean 'Rf_allocVector'? 840 | PROTECT(result_r = allocVector(VECSXP, nResultListObjs)); nProtect++; | ^~~~~~~~~~~ /data/gannet/ripley/R/R-devel/include/Rinternals.h:371:36: note: in definition of macro 'PROTECT' 371 | #define PROTECT(s) Rf_protect(s) | ^ DS.cpp:874:37: error: 'mkChar' was not declared in this scope 874 | SET_VECTOR_ELT(resultName_r, 0, mkChar("beta.samples")); | ^~~~~~ DS.cpp:893:5: error: 'namesgets' was not declared in this scope; did you mean 'Rf_namesgets'? 893 | namesgets(result_r, resultName_r); | ^~~~~~~~~ | Rf_namesgets make[2]: *** [/data/gannet/ripley/R/R-devel/etc/Makeconf:202: DS.o] Error 1 make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-noRemap/spAbundance/src' ERROR: compilation failed for package ‘spAbundance’ * removing ‘/data/gannet/ripley/R/packages/tests-noRemap/Libs/spAbundance-lib/spAbundance’ Command exited with non-zero status 1 Time 0:02.27, 1.76 + 0.27