* installing *source* package ‘rioja’ ... ** package ‘rioja’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (GCC) 13.2.0’ using C++ compiler: ‘g++-13 (GCC) 13.2.0’ make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-noRemap/rioja/src' gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c analog.c -o analog.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c chclust.cpp -o chclust.o In file included from chclust.cpp:7: chclust.cpp: In function 'SEXPREC* chclust_c(SEXP, SEXP)': chclust.cpp:43:29: error: 'allocVector' was not declared in this scope; did you mean 'Rf_allocVector'? 43 | PROTECT(eMessage = allocVector(STRSXP, 1)); | ^~~~~~~~~~~ /data/gannet/ripley/R/R-devel/include/Rinternals.h:371:36: note: in definition of macro 'PROTECT' 371 | #define PROTECT(s) Rf_protect(s) | ^ chclust.cpp:44:38: error: 'mkChar' was not declared in this scope 44 | SET_STRING_ELT(eMessage, 0, mkChar("Error in Conslink C++ code")); | ^~~~~~ chclust.cpp:50:29: error: 'allocVector' was not declared in this scope; did you mean 'Rf_allocVector'? 50 | PROTECT(eMessage = allocVector(STRSXP, 1)); | ^~~~~~~~~~~ /data/gannet/ripley/R/R-devel/include/Rinternals.h:371:36: note: in definition of macro 'PROTECT' 371 | #define PROTECT(s) Rf_protect(s) | ^ chclust.cpp:51:38: error: 'mkChar' was not declared in this scope 51 | SET_STRING_ELT(eMessage, 0, mkChar("Error in ConISS C++ code")); | ^~~~~~ chclust.cpp:56:26: error: 'allocVector' was not declared in this scope; did you mean 'Rf_allocVector'? 56 | PROTECT(eMessage = allocVector(STRSXP, 1)); | ^~~~~~~~~~~ /data/gannet/ripley/R/R-devel/include/Rinternals.h:371:36: note: in definition of macro 'PROTECT' 371 | #define PROTECT(s) Rf_protect(s) | ^ chclust.cpp:57:35: error: 'mkChar' was not declared in this scope 57 | SET_STRING_ELT(eMessage, 0, mkChar("Unknown clustering method")); | ^~~~~~ chclust.cpp:61:20: error: 'allocVector' was not declared in this scope; did you mean 'Rf_allocVector'? 61 | PROTECT(sDend = allocVector(REALSXP, nr-1)); | ^~~~~~~~~~~ /data/gannet/ripley/R/R-devel/include/Rinternals.h:371:36: note: in definition of macro 'PROTECT' 371 | #define PROTECT(s) Rf_protect(s) | ^ make[2]: *** [/data/gannet/ripley/R/R-devel/etc/Makeconf:202: chclust.o] Error 1 make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-noRemap/rioja/src' ERROR: compilation failed for package ‘rioja’ * removing ‘/data/gannet/ripley/R/packages/tests-noRemap/Libs/rioja-lib/rioja’ Command exited with non-zero status 1 Time 0:01.87, 1.51 + 0.26