* installing *source* package ‘dti’ ... ** package ‘dti’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (GCC) 13.2.0’ using Fortran compiler: ‘GNU Fortran (GCC) 13.2.0’ using C++ compiler: ‘g++-13 (GCC) 13.2.0’ make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-noRemap/dti/src' g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c Converter.cpp -o Converter.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c Fiber.cpp -o Fiber.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c Fibertracking.cpp -o Fibertracking.o gfortran-13 -fpic -g -O2 -mtune=native -Wall -pedantic -c LawsonHansonnnls.f -o LawsonHansonnnls.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c TrackingInterface.cpp -o TrackingInterface.o In file included from Vector.h:10, from Voxel.h:4, from Fiber.h:4, from Fibertracking.h:4, from TrackingInterface.cpp:2: TrackingInterface.cpp: In function 'SEXPREC* interface_tracking(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': TrackingInterface.cpp:39:34: error: 'allocVector' was not declared in this scope; did you mean 'Rf_allocVector'? 39 | PROTECT(retVec = allocVector(REALSXP, length)); | ^~~~~~~~~~~ /data/gannet/ripley/R/R-devel/include/Rinternals.h:371:36: note: in definition of macro 'PROTECT' 371 | #define PROTECT(s) Rf_protect(s) | ^ TrackingInterface.cpp: In function 'SEXPREC* interface_tracking_mixtensor(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': TrackingInterface.cpp:104:34: error: 'allocVector' was not declared in this scope; did you mean 'Rf_allocVector'? 104 | PROTECT(retVec = allocVector(REALSXP, length)); | ^~~~~~~~~~~ /data/gannet/ripley/R/R-devel/include/Rinternals.h:371:36: note: in definition of macro 'PROTECT' 371 | #define PROTECT(s) Rf_protect(s) | ^ make[2]: *** [/data/gannet/ripley/R/R-devel/etc/Makeconf:202: TrackingInterface.o] Error 1 make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-noRemap/dti/src' ERROR: compilation failed for package ‘dti’ * removing ‘/data/gannet/ripley/R/packages/tests-noRemap/Libs/dti-lib/dti’ Command exited with non-zero status 1 Time 0:09.17, 8.06 + 0.80