* installing *source* package ‘diversitree’ ... ** package ‘diversitree’ successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... gcc-13 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc-13 accepts -g... yes checking for gcc-13 option to accept ISO C89... none needed checking how to run the C preprocessor... gcc-13 -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking fftw3.h usability... yes checking fftw3.h presence... yes checking for fftw3.h... yes Using fftw for QuaSSE FFT calculations checking for gsl-config... /usr/bin/gsl-config checking if GSL version >= 1.15... yes configure: creating ./config.status config.status: creating src/Makevars config.status: creating src/config.h ** libs using C compiler: ‘gcc-13 (GCC) 13.2.0’ using C++ compiler: ‘g++-13 (GCC) 13.2.0’ make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-noRemap/diversitree/src' g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -I/usr/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c GslOdeBase.cpp -o GslOdeBase.o In file included from /data/gannet/ripley/R/test-dev/Rcpp/include/RcppCommon.h:30, from /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp.h:27, from GslOdeBase.cpp:1: /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/r/headers.h:26: warning: "R_NO_REMAP" redefined 26 | #define R_NO_REMAP | : note: this is the location of the previous definition g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -I/usr/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c GslOdeCompiled.cpp -o GslOdeCompiled.o In file included from /data/gannet/ripley/R/test-dev/Rcpp/include/RcppCommon.h:30, from /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp.h:27, from GslOdeBase.h:32, from GslOdeCompiled.h:7, from GslOdeCompiled.cpp:1: /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/r/headers.h:26: warning: "R_NO_REMAP" redefined 26 | #define R_NO_REMAP | : note: this is the location of the previous definition g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -I/usr/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c GslOdeR.cpp -o GslOdeR.o In file included from /data/gannet/ripley/R/test-dev/Rcpp/include/RcppCommon.h:30, from /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp.h:27, from GslOdeBase.h:32, from GslOdeR.h:5, from GslOdeR.cpp:1: /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/r/headers.h:26: warning: "R_NO_REMAP" redefined 26 | #define R_NO_REMAP | : note: this is the location of the previous definition g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -I/usr/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c GslOdeTime.cpp -o GslOdeTime.o In file included from /data/gannet/ripley/R/test-dev/Rcpp/include/RcppCommon.h:30, from /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp.h:27, from GslOdeBase.h:32, from GslOdeTime.h:9, from GslOdeTime.cpp:1: /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/r/headers.h:26: warning: "R_NO_REMAP" redefined 26 | #define R_NO_REMAP | : note: this is the location of the previous definition g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -I/usr/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c Spline.cpp -o Spline.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -I/usr/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c TimeMachine.cpp -o TimeMachine.o TimeMachine.cpp: In member function 'void TimeMachine::set(std::vector)': TimeMachine.cpp:39:5: error: 'error' was not declared in this scope; did you mean 'perror'? 39 | error("Expected %d parameters, recieved %d", (int)np_in, (int)pars.size()); | ^~~~~ | perror TimeMachine.cpp: In constructor 'TimeMachineFunction::TimeMachineFunction(std::string, std::string, bool, bool, Spline*)': TimeMachine.cpp:181:7: error: 'error' was not declared in this scope; did you mean 'perror'? 181 | error("Should not be able to get here!"); | ^~~~~ | perror TimeMachine.cpp:183:5: error: 'error' was not declared in this scope; did you mean 'perror'? 183 | error("Unknown function type %s", func_name.c_str()); | ^~~~~ | perror TimeMachine.cpp: In member function 'double TimeMachineFunction::check_ok(double)': TimeMachine.cpp:204:7: error: 'error' was not declared in this scope; did you mean 'perror'? 204 | error("Value of %s (%s) must be nonnegative", | ^~~~~ | perror make[2]: *** [/data/gannet/ripley/R/R-devel/etc/Makeconf:202: TimeMachine.o] Error 1 make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-noRemap/diversitree/src' ERROR: compilation failed for package ‘diversitree’ * removing ‘/data/gannet/ripley/R/packages/tests-noRemap/Libs/diversitree-lib/diversitree’ Command exited with non-zero status 1 Time 0:58.23, 49.45 + 5.13