* installing *source* package ‘PeakSegDisk’ ... ** package ‘PeakSegDisk’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-13 (GCC) 13.2.0’ make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-noRemap/PeakSegDisk/src' g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c PeakSegFPOPLog.cpp -o PeakSegFPOPLog.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c funPieceListLog.cpp -o funPieceListLog.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c interface.cpp -o interface.o interface.cpp: In function 'void PeakSegFPOP_interface(char**, char**, char**)': interface.cpp:17:5: error: 'error' was not declared in this scope; did you mean 'perror'? 17 | error("penalty=%s but must be finite", penalty); | ^~~~~ | perror interface.cpp:20:5: error: 'error' was not declared in this scope; did you mean 'perror'? 20 | error("penalty=%s must be non-negative", penalty); | ^~~~~ | perror interface.cpp:23:5: error: 'error' was not declared in this scope; did you mean 'perror'? 23 | error("unable to open input file for reading %s", bedGraph); | ^~~~~ | perror interface.cpp:26:5: error: 'error' was not declared in this scope; did you mean 'perror'? 26 | error("each line of input data file %s should have exactly four columns", bedGraph); | ^~~~~ | perror interface.cpp:29:5: error: 'error' was not declared in this scope; did you mean 'perror'? 29 | error("fourth column of input data file %s should be integer", bedGraph); | ^~~~~ | perror interface.cpp:32:5: error: 'error' was not declared in this scope; did you mean 'perror'? 32 | error("there should be no gaps (columns 2-3) in input data file %s", bedGraph); | ^~~~~ | perror interface.cpp:35:5: error: 'error' was not declared in this scope; did you mean 'perror'? 35 | error("unable to write to cost function database file %s", db); | ^~~~~ | perror interface.cpp:38:5: error: 'error' was not declared in this scope; did you mean 'perror'? 38 | error("unable to write to loss output file %s_penalty=%s_loss.tsv", | ^~~~~ | perror interface.cpp:42:5: error: 'error' was not declared in this scope; did you mean 'perror'? 42 | error("unable to write to segments output file %s_penalty=%s_segments.bed", | ^~~~~ | perror interface.cpp:46:5: error: 'error' was not declared in this scope; did you mean 'perror'? 46 | error("input file %s contains no data", bedGraph); | ^~~~~ | perror interface.cpp:49:5: error: 'error' was not declared in this scope; did you mean 'perror'? 49 | error | ^~~~~ | perror interface.cpp:54:5: error: 'error' was not declared in this scope; did you mean 'perror'? 54 | error("error code %d", status); | ^~~~~ | perror make[2]: *** [/data/gannet/ripley/R/R-devel/etc/Makeconf:202: interface.o] Error 1 make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-noRemap/PeakSegDisk/src' ERROR: compilation failed for package ‘PeakSegDisk’ * removing ‘/data/gannet/ripley/R/packages/tests-noRemap/Libs/PeakSegDisk-lib/PeakSegDisk’ Command exited with non-zero status 1 Time 0:08.45, 6.67 + 0.59