* installing *source* package ‘NMF’ ... ** package ‘NMF’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (GCC) 13.2.0’ using C++ compiler: ‘g++-13 (GCC) 13.2.0’ make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-noRemap/NMF/src' g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c distance.cpp -o distance.o In file included from distance.cpp:18: distance.cpp: In function 'SEXPREC* rss(double*, double*, int, int)': distance.cpp:118:45: error: 'ScalarReal' was not declared in this scope; did you mean 'Rf_ScalarReal'? 118 | else return ScalarReal(NA_REAL); | ^~~~~~~~~~ | Rf_ScalarReal distance.cpp:120:37: error: 'ScalarReal' was not declared in this scope; did you mean 'Rf_ScalarReal'? 120 | else return ScalarReal(NA_REAL); | ^~~~~~~~~~ | Rf_ScalarReal distance.cpp:124:12: error: 'ScalarReal' was not declared in this scope; did you mean 'Rf_ScalarReal'? 124 | return ScalarReal(dist); | ^~~~~~~~~~ | Rf_ScalarReal distance.cpp: In function 'SEXPREC* KL(double*, double*, int, int)': distance.cpp:152:37: error: 'ScalarReal' was not declared in this scope; did you mean 'Rf_ScalarReal'? 152 | else return ScalarReal(NA_REAL); | ^~~~~~~~~~ | Rf_ScalarReal distance.cpp:158:32: error: 'ScalarReal' was not declared in this scope; did you mean 'Rf_ScalarReal'? 158 | return ScalarReal(dev); | ^~~~~~~~~~ | Rf_ScalarReal distance.cpp:161:12: error: 'ScalarReal' was not declared in this scope; did you mean 'Rf_ScalarReal'? 161 | return ScalarReal(dist); | ^~~~~~~~~~ | Rf_ScalarReal In file included from distance.cpp:21: distance.cpp: In function 'SEXPREC* rss(double*, int*, int, int)': distance.cpp:118:45: error: 'ScalarReal' was not declared in this scope; did you mean 'Rf_ScalarReal'? 118 | else return ScalarReal(NA_REAL); | ^~~~~~~~~~ | Rf_ScalarReal distance.cpp:120:37: error: 'ScalarReal' was not declared in this scope; did you mean 'Rf_ScalarReal'? 120 | else return ScalarReal(NA_REAL); | ^~~~~~~~~~ | Rf_ScalarReal distance.cpp:124:12: error: 'ScalarReal' was not declared in this scope; did you mean 'Rf_ScalarReal'? 124 | return ScalarReal(dist); | ^~~~~~~~~~ | Rf_ScalarReal distance.cpp: In function 'SEXPREC* KL(double*, int*, int, int)': distance.cpp:152:37: error: 'ScalarReal' was not declared in this scope; did you mean 'Rf_ScalarReal'? 152 | else return ScalarReal(NA_REAL); | ^~~~~~~~~~ | Rf_ScalarReal distance.cpp:158:32: error: 'ScalarReal' was not declared in this scope; did you mean 'Rf_ScalarReal'? 158 | return ScalarReal(dev); | ^~~~~~~~~~ | Rf_ScalarReal distance.cpp:161:12: error: 'ScalarReal' was not declared in this scope; did you mean 'Rf_ScalarReal'? 161 | return ScalarReal(dist); | ^~~~~~~~~~ | Rf_ScalarReal In file included from distance.cpp:26: distance.cpp: In function 'SEXPREC* rss(int*, double*, int, int)': distance.cpp:118:45: error: 'ScalarReal' was not declared in this scope; did you mean 'Rf_ScalarReal'? 118 | else return ScalarReal(NA_REAL); | ^~~~~~~~~~ | Rf_ScalarReal distance.cpp:120:37: error: 'ScalarReal' was not declared in this scope; did you mean 'Rf_ScalarReal'? 120 | else return ScalarReal(NA_REAL); | ^~~~~~~~~~ | Rf_ScalarReal distance.cpp:124:12: error: 'ScalarReal' was not declared in this scope; did you mean 'Rf_ScalarReal'? 124 | return ScalarReal(dist); | ^~~~~~~~~~ | Rf_ScalarReal distance.cpp: In function 'SEXPREC* KL(int*, double*, int, int)': distance.cpp:152:37: error: 'ScalarReal' was not declared in this scope; did you mean 'Rf_ScalarReal'? 152 | else return ScalarReal(NA_REAL); | ^~~~~~~~~~ | Rf_ScalarReal distance.cpp:158:32: error: 'ScalarReal' was not declared in this scope; did you mean 'Rf_ScalarReal'? 158 | return ScalarReal(dev); | ^~~~~~~~~~ | Rf_ScalarReal distance.cpp:161:12: error: 'ScalarReal' was not declared in this scope; did you mean 'Rf_ScalarReal'? 161 | return ScalarReal(dist); | ^~~~~~~~~~ | Rf_ScalarReal In file included from distance.cpp:30: distance.cpp: In function 'SEXPREC* rss(int*, int*, int, int)': distance.cpp:118:45: error: 'ScalarReal' was not declared in this scope; did you mean 'Rf_ScalarReal'? 118 | else return ScalarReal(NA_REAL); | ^~~~~~~~~~ | Rf_ScalarReal distance.cpp:120:37: error: 'ScalarReal' was not declared in this scope; did you mean 'Rf_ScalarReal'? 120 | else return ScalarReal(NA_REAL); | ^~~~~~~~~~ | Rf_ScalarReal distance.cpp:124:12: error: 'ScalarReal' was not declared in this scope; did you mean 'Rf_ScalarReal'? 124 | return ScalarReal(dist); | ^~~~~~~~~~ | Rf_ScalarReal distance.cpp: In function 'SEXPREC* KL(int*, int*, int, int)': distance.cpp:152:37: error: 'ScalarReal' was not declared in this scope; did you mean 'Rf_ScalarReal'? 152 | else return ScalarReal(NA_REAL); | ^~~~~~~~~~ | Rf_ScalarReal distance.cpp:158:32: error: 'ScalarReal' was not declared in this scope; did you mean 'Rf_ScalarReal'? 158 | return ScalarReal(dev); | ^~~~~~~~~~ | Rf_ScalarReal distance.cpp:161:12: error: 'ScalarReal' was not declared in this scope; did you mean 'Rf_ScalarReal'? 161 | return ScalarReal(dist); | ^~~~~~~~~~ | Rf_ScalarReal distance.cpp: In function 'SEXPREC* Euclidean_rss(SEXP, SEXP)': distance.cpp:42:9: error: 'error' was not declared in this scope; did you mean 'perror'? 42 | error("non-conformable arrays (rows)"); | ^~~~~ | perror distance.cpp:44:9: error: 'error' was not declared in this scope; did you mean 'perror'? 44 | error("non-conformable arrays (columns)"); | ^~~~~ | perror distance.cpp:43:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 43 | if( INTEGER(GET_DIM(y))[1] != p ) | ^~ distance.cpp:46:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 46 | if( TYPEOF(x) == REALSXP ){// x is double | ^~ distance.cpp: In function 'SEXPREC* KL_divergence(SEXP, SEXP)': distance.cpp:68:9: error: 'error' was not declared in this scope; did you mean 'perror'? 68 | error("non-conformable arrays (rows)"); | ^~~~~ | perror distance.cpp:70:9: error: 'error' was not declared in this scope; did you mean 'perror'? 70 | error("non-conformable arrays (columns)"); | ^~~~~ | perror distance.cpp:69:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 69 | if( INTEGER(GET_DIM(y))[1] != p ) | ^~ distance.cpp:72:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 72 | if( TYPEOF(x) == REALSXP ){// x is double | ^~ make[2]: *** [/data/gannet/ripley/R/R-devel/etc/Makeconf:202: distance.o] Error 1 make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-noRemap/NMF/src' ERROR: compilation failed for package ‘NMF’ * removing ‘/data/gannet/ripley/R/packages/tests-noRemap/Libs/NMF-lib/NMF’ Command exited with non-zero status 1 Time 0:01.90, 1.33 + 0.20