* installing *source* package ‘EpiContactTrace’ ...
** package ‘EpiContactTrace’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-noRemap/EpiContactTrace/src'
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c trace.cpp -o trace.o
In file included from trace.cpp:26:
trace.cpp: In function 'SEXPREC* shortestPaths(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
trace.cpp:330:22: error: 'allocVector' was not declared in this scope; did you mean 'Rf_allocVector'?
  330 |     PROTECT(result = allocVector(VECSXP, 6));
      |                      ^~~~~~~~~~~
/data/gannet/ripley/R/R-devel/include/Rinternals.h:371:36: note: in definition of macro 'PROTECT'
  371 | #define PROTECT(s)      Rf_protect(s)
      |                                    ^
trace.cpp:336:31: error: 'mkChar' was not declared in this scope
  336 |     SET_STRING_ELT(names,  0, mkChar("inDistance"));
      |                               ^~~~~~
trace.cpp:363:5: error: 'setAttrib' was not declared in this scope; did you mean 'Rf_setAttrib'?
  363 |     setAttrib(result, R_NamesSymbol, names);
      |     ^~~~~~~~~
      |     Rf_setAttrib
trace.cpp: In function 'SEXPREC* traceContacts(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
trace.cpp:468:22: error: 'allocVector' was not declared in this scope; did you mean 'Rf_allocVector'?
  468 |     PROTECT(result = allocVector(VECSXP, 4 * LENGTH(root)));
      |                      ^~~~~~~~~~~
/data/gannet/ripley/R/R-devel/include/Rinternals.h:371:36: note: in definition of macro 'PROTECT'
  371 | #define PROTECT(s)      Rf_protect(s)
      |                                    ^
trace.cpp: In function 'SEXPREC* networkSummary(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
trace.cpp:657:22: error: 'allocVector' was not declared in this scope; did you mean 'Rf_allocVector'?
  657 |     PROTECT(result = allocVector(VECSXP, 4));
      |                      ^~~~~~~~~~~
/data/gannet/ripley/R/R-devel/include/Rinternals.h:371:36: note: in definition of macro 'PROTECT'
  371 | #define PROTECT(s)      Rf_protect(s)
      |                                    ^
trace.cpp:663:31: error: 'mkChar' was not declared in this scope
  663 |     SET_STRING_ELT(names,  0, mkChar("inDegree"));
      |                               ^~~~~~
trace.cpp:680:5: error: 'setAttrib' was not declared in this scope; did you mean 'Rf_setAttrib'?
  680 |     setAttrib(result, R_NamesSymbol, names);
      |     ^~~~~~~~~
      |     Rf_setAttrib
make[2]: *** [/data/gannet/ripley/R/R-devel/etc/Makeconf:202: trace.o] Error 1
make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-noRemap/EpiContactTrace/src'
ERROR: compilation failed for package ‘EpiContactTrace’
* removing ‘/data/gannet/ripley/R/packages/tests-noRemap/Libs/EpiContactTrace-lib/EpiContactTrace’
Command exited with non-zero status 1
Time 0:02.18, 1.67 + 0.27