* installing *source* package ‘CRF’ ...
** package ‘CRF’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-noRemap/CRF/src'
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c BP.cpp -o BP.o
In file included from CRF.h:4,
                 from BP.cpp:1:
misc.h: In function 'void SetValues(SEXP, T*, T)':
misc.h:24:23: error: there are no arguments to 'length' that depend on a template parameter, so a declaration of 'length' must be available [-fpermissive]
   24 |   for (int i = 0; i < length(r); i++)
      |                       ^~~~~~
misc.h:24:23: note: (if you use '-fpermissive', G++ will accept your code, but allowing the use of an undeclared name is deprecated)
misc.h: In function 'SEXPREC* GetVar(SEXP, const char*)':
misc.h:32:18: error: 'install' was not declared in this scope
   32 |   return findVar(install(name), env);
      |                  ^~~~~~~
misc.h:32:10: error: 'findVar' was not declared in this scope; did you mean 'Rf_findVar'?
   32 |   return findVar(install(name), env);
      |          ^~~~~~~
      |          Rf_findVar
misc.h: In function 'void SetVar(SEXP, const char*, SEXP)':
misc.h:66:13: error: 'install' was not declared in this scope
   66 |   defineVar(install(name), var, env);
      |             ^~~~~~~
misc.h:66:3: error: 'defineVar' was not declared in this scope; did you mean 'Rf_defineVar'?
   66 |   defineVar(install(name), var, env);
      |   ^~~~~~~~~
      |   Rf_defineVar
misc.h: In function 'SEXPREC* GetListElement(SEXP, int)':
misc.h:73:21: error: 'length' was not declared in this scope
   73 |   if (i >= 0 && i < length(list)) return VECTOR_ELT(list, i);
      |                     ^~~~~~
misc.h: In function 'SEXPREC* GetListElement(SEXP, const char*)':
misc.h:81:36: error: 'getAttrib' was not declared in this scope; did you mean 'Rf_getAttrib'?
   81 |   SEXP value = R_NilValue, names = getAttrib(list, R_NamesSymbol);
      |                                    ^~~~~~~~~
      |                                    Rf_getAttrib
misc.h:82:23: error: 'length' was not declared in this scope
   82 |   for (int i = 0; i < length(list); i++)
      |                       ^~~~~~
misc.h:82:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
   82 |   for (int i = 0; i < length(list); i++)
      |   ^~~
misc.h:88:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
   88 |     return value;
      |     ^~~~~~
misc.h: In function 'void SetListElement(SEXP, int, const char*, SEXP)':
misc.h:95:17: error: 'getAttrib' was not declared in this scope; did you mean 'Rf_getAttrib'?
   95 |   SEXP _names = getAttrib(list, R_NamesSymbol);
      |                 ^~~~~~~~~
      |                 Rf_getAttrib
In file included from /data/gannet/ripley/R/R-devel/include/Rdefines.h:41,
                 from CRF.h:2:
misc.h:98:33: error: 'length' was not declared in this scope
   98 |     PROTECT(_names = NEW_STRING(length(list)));
      |                                 ^~~~~~
/data/gannet/ripley/R/R-devel/include/Rinternals.h:371:36: note: in definition of macro 'PROTECT'
  371 | #define PROTECT(s)      Rf_protect(s)
      |                                    ^
/data/gannet/ripley/R/R-devel/include/Rdefines.h:90:33: note: in expansion of macro 'NEW_CHARACTER'
   90 | #define NEW_STRING(n)           NEW_CHARACTER(n)
      |                                 ^~~~~~~~~~~~~
misc.h:98:22: note: in expansion of macro 'NEW_STRING'
   98 |     PROTECT(_names = NEW_STRING(length(list)));
      |                      ^~~~~~~~~~
misc.h:99:31: error: 'mkChar' was not declared in this scope
   99 |     SET_STRING_ELT(_names, i, mkChar(tag));
      |                               ^~~~~~
misc.h:100:5: error: 'setAttrib' was not declared in this scope; did you mean 'Rf_setAttrib'?
  100 |     setAttrib(list, R_NamesSymbol, _names);
      |     ^~~~~~~~~
      |     Rf_setAttrib
misc.h:104:31: error: 'mkChar' was not declared in this scope
  104 |     SET_STRING_ELT(_names, i, mkChar(tag));
      |                               ^~~~~~
make[2]: *** [/data/gannet/ripley/R/R-devel/etc/Makeconf:202: BP.o] Error 1
make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-noRemap/CRF/src'
ERROR: compilation failed for package ‘CRF’
* removing ‘/data/gannet/ripley/R/packages/tests-noRemap/Libs/CRF-lib/CRF’
Command exited with non-zero status 1
Time 0:01.60, 1.17 + 0.21