* using log directory ‘/data/gannet/ripley/R/packages/tests-noLD/hgam.Rcheck’
* using R Under development (unstable) (2019-11-28 r77469)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘hgam/DESCRIPTION’ ... OK
* this is package ‘hgam’ version ‘0.1-2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘hgam’ can be installed ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
  ‘grplasso’ ‘lattice’ ‘rgl’ ‘splines’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
Btilde: no visible global function definition for ‘bs’
dgp: no visible global function definition for ‘runif’
dgp: no visible global function definition for ‘rnorm’
fitted.hgam: no visible global function definition for ‘predict’
hgam: no visible global function definition for ‘LinReg’
hgam: no visible global function definition for ‘model.frame’
hgam: no visible global function definition for ‘model.response’
hgam.fit: no visible global function definition for ‘LinReg’
hgam.fit: no visible binding for global variable ‘quantile’
hgam.fit: no visible global function definition for ‘grplasso’
hgam.fit: no visible global function definition for ‘grpl.control’
hrisk: no visible binding for global variable ‘mclapply’
hrisk: no visible global function definition for ‘coef’
hrisk: no visible global function definition for ‘rmultinom’
hrisk : <anonymous>: no visible global function definition for
  ‘lambdamax’
hrisk : <anonymous>: no visible global function definition for ‘fitted’
logLik.hgam: no visible global function definition for ‘fitted’
plot.hgam: no visible global function definition for ‘coef’
plot.hgam: no visible global function definition for ‘predict’
plot.hgam : <anonymous>: no visible global function definition for
  ‘predict’
plot.hrisk: no visible global function definition for ‘plot3d’
plot.hrisk: no visible global function definition for ‘levelplot’
predict.hgam: no visible global function definition for ‘coef’
print.hgam: no visible global function definition for ‘coef’
print.summary.hgam: no visible global function definition for
  ‘printCoefmat’
residuals.hgam: no visible global function definition for ‘fitted’
summary.hgam: no visible global function definition for ‘residuals’
Undefined global functions or variables:
  LinReg bs coef fitted grpl.control grplasso lambdamax levelplot
  mclapply model.frame model.response plot3d predict printCoefmat
  quantile residuals rmultinom rnorm runif
Consider adding
  importFrom("stats", "coef", "fitted", "model.frame", "model.response",
             "predict", "printCoefmat", "quantile", "residuals",
             "rmultinom", "rnorm", "runif")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘regtest.R’
  Comparing ‘regtest.Rout’ to ‘regtest.Rout.save’ ...9d8
< There were 50 or more warnings (use warnings() to see the first 50)
2134d2132
< There were 50 or more warnings (use warnings() to see the first 50)
2153d2150
< There were 50 or more warnings (use warnings() to see the first 50)
2159c2156
< [1] 259.297
---
> [1] 259.0373
2161c2158
< [1] 95.69272
---
> [1] 95.999
 OK
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 2 NOTEs
See
  ‘/data/gannet/ripley/R/packages/tests-noLD/hgam.Rcheck/00check.log’
for details.


Time 1:09.21, 42.80 + 5.72