==45520== Memcheck, a memory error detector
==45520== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==45520== Using Valgrind-3.15.0 and LibVEX; rerun with -h for copyright info
==45520== Command: /data/blackswan/ripley/R/R-devel-vg/bin/exec/R -f testthat.R --restore --save --no-readline --vanilla
==45520==
R Under development (unstable) (2019-11-27 r77464) -- "Unsuffered Consequences"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(episode)
>
> test_check("episode")
==45520== Conditional jump or move depends on uninitialised value(s)
==45520== at 0x4BB87CC: log@@GLIBC_2.29 (in /usr/lib64/libm-2.29.so)
==45520== by 0x172F777B: optim::conv_criteria(__gnu_cxx::__normal_iterator > >, double, arma::Col) (packages/tests-vg/episode/src/motor_optim.cpp:319)
==45520== by 0x172F8074: optim::optimise(__gnu_cxx::__normal_iterator > >) (packages/tests-vg/episode/src/motor_optim.cpp:385)
==45520== by 0x172F8983: optim::optimise() (packages/tests-vg/episode/src/motor_optim.cpp:476)
==45520== by 0x172F94CE: operator() (/usr/include/c++/9/bits/stl_function.h:1248)
==45520== by 0x172F94CE: for_each<__gnu_cxx::__normal_iterator >, std::mem_fun_ref_t > (/usr/include/c++/9/bits/stl_algo.h:3876)
==45520== by 0x172F94CE: move(std::vector >&) (packages/tests-vg/episode/src/motor_optim.cpp:559)
==45520== by 0x1734919E: bronc(Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Cube, arma::Col, bool, bool, bool, bool) (packages/tests-vg/episode/src/ode_optim.cpp:615)
==45520== by 0x172D7A1C: _episode_bronc (packages/tests-vg/episode/src/RcppExports.cpp:101)
==45520== by 0x49BFC7: R_doDotCall (svn/R-devel/src/main/dotcode.c:646)
==45520== by 0x4D84D1: bcEval (svn/R-devel/src/main/eval.c:7609)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520== by 0x4EB72C: Rf_applyClosure (svn/R-devel/src/main/eval.c:1778)
==45520== Uninitialised value was created by a heap allocation
==45520== at 0x4838E86: operator new(unsigned long) (/builddir/build/BUILD/valgrind-3.15.0/coregrind/m_replacemalloc/vg_replace_malloc.c:344)
==45520== by 0x173504C2: allocate (/usr/include/c++/9/ext/new_allocator.h:114)
==45520== by 0x173504C2: allocate (/usr/include/c++/9/bits/alloc_traits.h:444)
==45520== by 0x173504C2: _M_allocate (/usr/include/c++/9/bits/stl_vector.h:343)
==45520== by 0x173504C2: void std::vector >::_M_realloc_insert(__gnu_cxx::__normal_iterator > >, optim&&) (/usr/include/c++/9/bits/vector.tcc:440)
==45520== by 0x173490CD: push_back (/usr/include/c++/9/bits/stl_vector.h:1201)
==45520== by 0x173490CD: bronc(Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Cube, arma::Col, bool, bool, bool, bool) (packages/tests-vg/episode/src/ode_optim.cpp:601)
==45520== by 0x172D7A1C: _episode_bronc (packages/tests-vg/episode/src/RcppExports.cpp:101)
==45520== by 0x49BFC7: R_doDotCall (svn/R-devel/src/main/dotcode.c:646)
==45520== by 0x4D84D1: bcEval (svn/R-devel/src/main/eval.c:7609)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520== by 0x4EB72C: Rf_applyClosure (svn/R-devel/src/main/eval.c:1778)
==45520== by 0x4DC310: bcEval (svn/R-devel/src/main/eval.c:7021)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520==
==45520== Conditional jump or move depends on uninitialised value(s)
==45520== at 0x4C0CF4C: __ieee754_log_avx (in /usr/lib64/libm-2.29.so)
==45520== by 0x172F777B: optim::conv_criteria(__gnu_cxx::__normal_iterator > >, double, arma::Col) (packages/tests-vg/episode/src/motor_optim.cpp:319)
==45520== by 0x172F8074: optim::optimise(__gnu_cxx::__normal_iterator > >) (packages/tests-vg/episode/src/motor_optim.cpp:385)
==45520== by 0x172F8983: optim::optimise() (packages/tests-vg/episode/src/motor_optim.cpp:476)
==45520== by 0x172F94CE: operator() (/usr/include/c++/9/bits/stl_function.h:1248)
==45520== by 0x172F94CE: for_each<__gnu_cxx::__normal_iterator >, std::mem_fun_ref_t > (/usr/include/c++/9/bits/stl_algo.h:3876)
==45520== by 0x172F94CE: move(std::vector >&) (packages/tests-vg/episode/src/motor_optim.cpp:559)
==45520== by 0x1734919E: bronc(Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Cube, arma::Col, bool, bool, bool, bool) (packages/tests-vg/episode/src/ode_optim.cpp:615)
==45520== by 0x172D7A1C: _episode_bronc (packages/tests-vg/episode/src/RcppExports.cpp:101)
==45520== by 0x49BFC7: R_doDotCall (svn/R-devel/src/main/dotcode.c:646)
==45520== by 0x4D84D1: bcEval (svn/R-devel/src/main/eval.c:7609)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520== by 0x4EB72C: Rf_applyClosure (svn/R-devel/src/main/eval.c:1778)
==45520== Uninitialised value was created by a heap allocation
==45520== at 0x4838E86: operator new(unsigned long) (/builddir/build/BUILD/valgrind-3.15.0/coregrind/m_replacemalloc/vg_replace_malloc.c:344)
==45520== by 0x173504C2: allocate (/usr/include/c++/9/ext/new_allocator.h:114)
==45520== by 0x173504C2: allocate (/usr/include/c++/9/bits/alloc_traits.h:444)
==45520== by 0x173504C2: _M_allocate (/usr/include/c++/9/bits/stl_vector.h:343)
==45520== by 0x173504C2: void std::vector >::_M_realloc_insert(__gnu_cxx::__normal_iterator > >, optim&&) (/usr/include/c++/9/bits/vector.tcc:440)
==45520== by 0x173490CD: push_back (/usr/include/c++/9/bits/stl_vector.h:1201)
==45520== by 0x173490CD: bronc(Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Cube, arma::Col, bool, bool, bool, bool) (packages/tests-vg/episode/src/ode_optim.cpp:601)
==45520== by 0x172D7A1C: _episode_bronc (packages/tests-vg/episode/src/RcppExports.cpp:101)
==45520== by 0x49BFC7: R_doDotCall (svn/R-devel/src/main/dotcode.c:646)
==45520== by 0x4D84D1: bcEval (svn/R-devel/src/main/eval.c:7609)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520== by 0x4EB72C: Rf_applyClosure (svn/R-devel/src/main/eval.c:1778)
==45520== by 0x4DC310: bcEval (svn/R-devel/src/main/eval.c:7021)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520==
==45520== Conditional jump or move depends on uninitialised value(s)
==45520== at 0x4C0CF5B: __ieee754_log_avx (in /usr/lib64/libm-2.29.so)
==45520== by 0x172F777B: optim::conv_criteria(__gnu_cxx::__normal_iterator > >, double, arma::Col) (packages/tests-vg/episode/src/motor_optim.cpp:319)
==45520== by 0x172F8074: optim::optimise(__gnu_cxx::__normal_iterator > >) (packages/tests-vg/episode/src/motor_optim.cpp:385)
==45520== by 0x172F8983: optim::optimise() (packages/tests-vg/episode/src/motor_optim.cpp:476)
==45520== by 0x172F94CE: operator() (/usr/include/c++/9/bits/stl_function.h:1248)
==45520== by 0x172F94CE: for_each<__gnu_cxx::__normal_iterator >, std::mem_fun_ref_t > (/usr/include/c++/9/bits/stl_algo.h:3876)
==45520== by 0x172F94CE: move(std::vector >&) (packages/tests-vg/episode/src/motor_optim.cpp:559)
==45520== by 0x1734919E: bronc(Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Cube, arma::Col, bool, bool, bool, bool) (packages/tests-vg/episode/src/ode_optim.cpp:615)
==45520== by 0x172D7A1C: _episode_bronc (packages/tests-vg/episode/src/RcppExports.cpp:101)
==45520== by 0x49BFC7: R_doDotCall (svn/R-devel/src/main/dotcode.c:646)
==45520== by 0x4D84D1: bcEval (svn/R-devel/src/main/eval.c:7609)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520== by 0x4EB72C: Rf_applyClosure (svn/R-devel/src/main/eval.c:1778)
==45520== Uninitialised value was created by a heap allocation
==45520== at 0x4838E86: operator new(unsigned long) (/builddir/build/BUILD/valgrind-3.15.0/coregrind/m_replacemalloc/vg_replace_malloc.c:344)
==45520== by 0x173504C2: allocate (/usr/include/c++/9/ext/new_allocator.h:114)
==45520== by 0x173504C2: allocate (/usr/include/c++/9/bits/alloc_traits.h:444)
==45520== by 0x173504C2: _M_allocate (/usr/include/c++/9/bits/stl_vector.h:343)
==45520== by 0x173504C2: void std::vector >::_M_realloc_insert(__gnu_cxx::__normal_iterator > >, optim&&) (/usr/include/c++/9/bits/vector.tcc:440)
==45520== by 0x173490CD: push_back (/usr/include/c++/9/bits/stl_vector.h:1201)
==45520== by 0x173490CD: bronc(Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Cube, arma::Col, bool, bool, bool, bool) (packages/tests-vg/episode/src/ode_optim.cpp:601)
==45520== by 0x172D7A1C: _episode_bronc (packages/tests-vg/episode/src/RcppExports.cpp:101)
==45520== by 0x49BFC7: R_doDotCall (svn/R-devel/src/main/dotcode.c:646)
==45520== by 0x4D84D1: bcEval (svn/R-devel/src/main/eval.c:7609)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520== by 0x4EB72C: Rf_applyClosure (svn/R-devel/src/main/eval.c:1778)
==45520== by 0x4DC310: bcEval (svn/R-devel/src/main/eval.c:7021)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520==
==45520== Conditional jump or move depends on uninitialised value(s)
==45520== at 0x4C0D178: __ieee754_log_avx (in /usr/lib64/libm-2.29.so)
==45520== by 0x172F777B: optim::conv_criteria(__gnu_cxx::__normal_iterator > >, double, arma::Col) (packages/tests-vg/episode/src/motor_optim.cpp:319)
==45520== by 0x172F8074: optim::optimise(__gnu_cxx::__normal_iterator > >) (packages/tests-vg/episode/src/motor_optim.cpp:385)
==45520== by 0x172F8983: optim::optimise() (packages/tests-vg/episode/src/motor_optim.cpp:476)
==45520== by 0x172F94CE: operator() (/usr/include/c++/9/bits/stl_function.h:1248)
==45520== by 0x172F94CE: for_each<__gnu_cxx::__normal_iterator >, std::mem_fun_ref_t > (/usr/include/c++/9/bits/stl_algo.h:3876)
==45520== by 0x172F94CE: move(std::vector >&) (packages/tests-vg/episode/src/motor_optim.cpp:559)
==45520== by 0x1734919E: bronc(Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Cube, arma::Col, bool, bool, bool, bool) (packages/tests-vg/episode/src/ode_optim.cpp:615)
==45520== by 0x172D7A1C: _episode_bronc (packages/tests-vg/episode/src/RcppExports.cpp:101)
==45520== by 0x49BFC7: R_doDotCall (svn/R-devel/src/main/dotcode.c:646)
==45520== by 0x4D84D1: bcEval (svn/R-devel/src/main/eval.c:7609)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520== by 0x4EB72C: Rf_applyClosure (svn/R-devel/src/main/eval.c:1778)
==45520== Uninitialised value was created by a heap allocation
==45520== at 0x4838E86: operator new(unsigned long) (/builddir/build/BUILD/valgrind-3.15.0/coregrind/m_replacemalloc/vg_replace_malloc.c:344)
==45520== by 0x173504C2: allocate (/usr/include/c++/9/ext/new_allocator.h:114)
==45520== by 0x173504C2: allocate (/usr/include/c++/9/bits/alloc_traits.h:444)
==45520== by 0x173504C2: _M_allocate (/usr/include/c++/9/bits/stl_vector.h:343)
==45520== by 0x173504C2: void std::vector >::_M_realloc_insert(__gnu_cxx::__normal_iterator > >, optim&&) (/usr/include/c++/9/bits/vector.tcc:440)
==45520== by 0x173490CD: push_back (/usr/include/c++/9/bits/stl_vector.h:1201)
==45520== by 0x173490CD: bronc(Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Cube, arma::Col, bool, bool, bool, bool) (packages/tests-vg/episode/src/ode_optim.cpp:601)
==45520== by 0x172D7A1C: _episode_bronc (packages/tests-vg/episode/src/RcppExports.cpp:101)
==45520== by 0x49BFC7: R_doDotCall (svn/R-devel/src/main/dotcode.c:646)
==45520== by 0x4D84D1: bcEval (svn/R-devel/src/main/eval.c:7609)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520== by 0x4EB72C: Rf_applyClosure (svn/R-devel/src/main/eval.c:1778)
==45520== by 0x4DC310: bcEval (svn/R-devel/src/main/eval.c:7021)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520==
==45520== Conditional jump or move depends on uninitialised value(s)
==45520== at 0x4C0D187: __ieee754_log_avx (in /usr/lib64/libm-2.29.so)
==45520== by 0x172F777B: optim::conv_criteria(__gnu_cxx::__normal_iterator > >, double, arma::Col) (packages/tests-vg/episode/src/motor_optim.cpp:319)
==45520== by 0x172F8074: optim::optimise(__gnu_cxx::__normal_iterator > >) (packages/tests-vg/episode/src/motor_optim.cpp:385)
==45520== by 0x172F8983: optim::optimise() (packages/tests-vg/episode/src/motor_optim.cpp:476)
==45520== by 0x172F94CE: operator() (/usr/include/c++/9/bits/stl_function.h:1248)
==45520== by 0x172F94CE: for_each<__gnu_cxx::__normal_iterator >, std::mem_fun_ref_t > (/usr/include/c++/9/bits/stl_algo.h:3876)
==45520== by 0x172F94CE: move(std::vector >&) (packages/tests-vg/episode/src/motor_optim.cpp:559)
==45520== by 0x1734919E: bronc(Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Cube, arma::Col, bool, bool, bool, bool) (packages/tests-vg/episode/src/ode_optim.cpp:615)
==45520== by 0x172D7A1C: _episode_bronc (packages/tests-vg/episode/src/RcppExports.cpp:101)
==45520== by 0x49BFC7: R_doDotCall (svn/R-devel/src/main/dotcode.c:646)
==45520== by 0x4D84D1: bcEval (svn/R-devel/src/main/eval.c:7609)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520== by 0x4EB72C: Rf_applyClosure (svn/R-devel/src/main/eval.c:1778)
==45520== Uninitialised value was created by a heap allocation
==45520== at 0x4838E86: operator new(unsigned long) (/builddir/build/BUILD/valgrind-3.15.0/coregrind/m_replacemalloc/vg_replace_malloc.c:344)
==45520== by 0x173504C2: allocate (/usr/include/c++/9/ext/new_allocator.h:114)
==45520== by 0x173504C2: allocate (/usr/include/c++/9/bits/alloc_traits.h:444)
==45520== by 0x173504C2: _M_allocate (/usr/include/c++/9/bits/stl_vector.h:343)
==45520== by 0x173504C2: void std::vector >::_M_realloc_insert(__gnu_cxx::__normal_iterator > >, optim&&) (/usr/include/c++/9/bits/vector.tcc:440)
==45520== by 0x173490CD: push_back (/usr/include/c++/9/bits/stl_vector.h:1201)
==45520== by 0x173490CD: bronc(Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Cube, arma::Col, bool, bool, bool, bool) (packages/tests-vg/episode/src/ode_optim.cpp:601)
==45520== by 0x172D7A1C: _episode_bronc (packages/tests-vg/episode/src/RcppExports.cpp:101)
==45520== by 0x49BFC7: R_doDotCall (svn/R-devel/src/main/dotcode.c:646)
==45520== by 0x4D84D1: bcEval (svn/R-devel/src/main/eval.c:7609)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520== by 0x4EB72C: Rf_applyClosure (svn/R-devel/src/main/eval.c:1778)
==45520== by 0x4DC310: bcEval (svn/R-devel/src/main/eval.c:7021)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520==
==45520== Conditional jump or move depends on uninitialised value(s)
==45520== at 0x4C0D18C: __ieee754_log_avx (in /usr/lib64/libm-2.29.so)
==45520== by 0x172F777B: optim::conv_criteria(__gnu_cxx::__normal_iterator > >, double, arma::Col) (packages/tests-vg/episode/src/motor_optim.cpp:319)
==45520== by 0x172F8074: optim::optimise(__gnu_cxx::__normal_iterator > >) (packages/tests-vg/episode/src/motor_optim.cpp:385)
==45520== by 0x172F8983: optim::optimise() (packages/tests-vg/episode/src/motor_optim.cpp:476)
==45520== by 0x172F94CE: operator() (/usr/include/c++/9/bits/stl_function.h:1248)
==45520== by 0x172F94CE: for_each<__gnu_cxx::__normal_iterator >, std::mem_fun_ref_t > (/usr/include/c++/9/bits/stl_algo.h:3876)
==45520== by 0x172F94CE: move(std::vector >&) (packages/tests-vg/episode/src/motor_optim.cpp:559)
==45520== by 0x1734919E: bronc(Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Cube, arma::Col, bool, bool, bool, bool) (packages/tests-vg/episode/src/ode_optim.cpp:615)
==45520== by 0x172D7A1C: _episode_bronc (packages/tests-vg/episode/src/RcppExports.cpp:101)
==45520== by 0x49BFC7: R_doDotCall (svn/R-devel/src/main/dotcode.c:646)
==45520== by 0x4D84D1: bcEval (svn/R-devel/src/main/eval.c:7609)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520== by 0x4EB72C: Rf_applyClosure (svn/R-devel/src/main/eval.c:1778)
==45520==
==45520== Conditional jump or move depends on uninitialised value(s)
==45520== at 0x4C0D19A: __ieee754_log_avx (in /usr/lib64/libm-2.29.so)
==45520== by 0x172F777B: optim::conv_criteria(__gnu_cxx::__normal_iterator > >, double, arma::Col) (packages/tests-vg/episode/src/motor_optim.cpp:319)
==45520== by 0x172F8074: optim::optimise(__gnu_cxx::__normal_iterator > >) (packages/tests-vg/episode/src/motor_optim.cpp:385)
==45520== by 0x172F8983: optim::optimise() (packages/tests-vg/episode/src/motor_optim.cpp:476)
==45520== by 0x172F94CE: operator() (/usr/include/c++/9/bits/stl_function.h:1248)
==45520== by 0x172F94CE: for_each<__gnu_cxx::__normal_iterator >, std::mem_fun_ref_t > (/usr/include/c++/9/bits/stl_algo.h:3876)
==45520== by 0x172F94CE: move(std::vector >&) (packages/tests-vg/episode/src/motor_optim.cpp:559)
==45520== by 0x1734919E: bronc(Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Cube, arma::Col, bool, bool, bool, bool) (packages/tests-vg/episode/src/ode_optim.cpp:615)
==45520== by 0x172D7A1C: _episode_bronc (packages/tests-vg/episode/src/RcppExports.cpp:101)
==45520== by 0x49BFC7: R_doDotCall (svn/R-devel/src/main/dotcode.c:646)
==45520== by 0x4D84D1: bcEval (svn/R-devel/src/main/eval.c:7609)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520== by 0x4EB72C: Rf_applyClosure (svn/R-devel/src/main/eval.c:1778)
==45520== Uninitialised value was created by a heap allocation
==45520== at 0x4838E86: operator new(unsigned long) (/builddir/build/BUILD/valgrind-3.15.0/coregrind/m_replacemalloc/vg_replace_malloc.c:344)
==45520== by 0x173504C2: allocate (/usr/include/c++/9/ext/new_allocator.h:114)
==45520== by 0x173504C2: allocate (/usr/include/c++/9/bits/alloc_traits.h:444)
==45520== by 0x173504C2: _M_allocate (/usr/include/c++/9/bits/stl_vector.h:343)
==45520== by 0x173504C2: void std::vector >::_M_realloc_insert(__gnu_cxx::__normal_iterator > >, optim&&) (/usr/include/c++/9/bits/vector.tcc:440)
==45520== by 0x173490CD: push_back (/usr/include/c++/9/bits/stl_vector.h:1201)
==45520== by 0x173490CD: bronc(Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Cube, arma::Col, bool, bool, bool, bool) (packages/tests-vg/episode/src/ode_optim.cpp:601)
==45520== by 0x172D7A1C: _episode_bronc (packages/tests-vg/episode/src/RcppExports.cpp:101)
==45520== by 0x49BFC7: R_doDotCall (svn/R-devel/src/main/dotcode.c:646)
==45520== by 0x4D84D1: bcEval (svn/R-devel/src/main/eval.c:7609)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520== by 0x4EB72C: Rf_applyClosure (svn/R-devel/src/main/eval.c:1778)
==45520== by 0x4DC310: bcEval (svn/R-devel/src/main/eval.c:7021)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520==
==45520== Use of uninitialised value of size 8
==45520== at 0x4C0CFD8: __ieee754_log_avx (in /usr/lib64/libm-2.29.so)
==45520== by 0x172F777B: optim::conv_criteria(__gnu_cxx::__normal_iterator > >, double, arma::Col) (packages/tests-vg/episode/src/motor_optim.cpp:319)
==45520== by 0x172F8074: optim::optimise(__gnu_cxx::__normal_iterator > >) (packages/tests-vg/episode/src/motor_optim.cpp:385)
==45520== by 0x172F8983: optim::optimise() (packages/tests-vg/episode/src/motor_optim.cpp:476)
==45520== by 0x172F94CE: operator() (/usr/include/c++/9/bits/stl_function.h:1248)
==45520== by 0x172F94CE: for_each<__gnu_cxx::__normal_iterator >, std::mem_fun_ref_t > (/usr/include/c++/9/bits/stl_algo.h:3876)
==45520== by 0x172F94CE: move(std::vector >&) (packages/tests-vg/episode/src/motor_optim.cpp:559)
==45520== by 0x1734919E: bronc(Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Cube, arma::Col, bool, bool, bool, bool) (packages/tests-vg/episode/src/ode_optim.cpp:615)
==45520== by 0x172D7A1C: _episode_bronc (packages/tests-vg/episode/src/RcppExports.cpp:101)
==45520== by 0x49BFC7: R_doDotCall (svn/R-devel/src/main/dotcode.c:646)
==45520== by 0x4D84D1: bcEval (svn/R-devel/src/main/eval.c:7609)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520== by 0x4EB72C: Rf_applyClosure (svn/R-devel/src/main/eval.c:1778)
==45520== Uninitialised value was created by a heap allocation
==45520== at 0x4838E86: operator new(unsigned long) (/builddir/build/BUILD/valgrind-3.15.0/coregrind/m_replacemalloc/vg_replace_malloc.c:344)
==45520== by 0x173504C2: allocate (/usr/include/c++/9/ext/new_allocator.h:114)
==45520== by 0x173504C2: allocate (/usr/include/c++/9/bits/alloc_traits.h:444)
==45520== by 0x173504C2: _M_allocate (/usr/include/c++/9/bits/stl_vector.h:343)
==45520== by 0x173504C2: void std::vector >::_M_realloc_insert(__gnu_cxx::__normal_iterator > >, optim&&) (/usr/include/c++/9/bits/vector.tcc:440)
==45520== by 0x173490CD: push_back (/usr/include/c++/9/bits/stl_vector.h:1201)
==45520== by 0x173490CD: bronc(Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Cube, arma::Col, bool, bool, bool, bool) (packages/tests-vg/episode/src/ode_optim.cpp:601)
==45520== by 0x172D7A1C: _episode_bronc (packages/tests-vg/episode/src/RcppExports.cpp:101)
==45520== by 0x49BFC7: R_doDotCall (svn/R-devel/src/main/dotcode.c:646)
==45520== by 0x4D84D1: bcEval (svn/R-devel/src/main/eval.c:7609)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520== by 0x4EB72C: Rf_applyClosure (svn/R-devel/src/main/eval.c:1778)
==45520== by 0x4DC310: bcEval (svn/R-devel/src/main/eval.c:7021)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520==
==45520== Use of uninitialised value of size 8
==45520== at 0x4C0CFE1: __ieee754_log_avx (in /usr/lib64/libm-2.29.so)
==45520== by 0x172F777B: optim::conv_criteria(__gnu_cxx::__normal_iterator > >, double, arma::Col) (packages/tests-vg/episode/src/motor_optim.cpp:319)
==45520== by 0x172F8074: optim::optimise(__gnu_cxx::__normal_iterator > >) (packages/tests-vg/episode/src/motor_optim.cpp:385)
==45520== by 0x172F8983: optim::optimise() (packages/tests-vg/episode/src/motor_optim.cpp:476)
==45520== by 0x172F94CE: operator() (/usr/include/c++/9/bits/stl_function.h:1248)
==45520== by 0x172F94CE: for_each<__gnu_cxx::__normal_iterator >, std::mem_fun_ref_t > (/usr/include/c++/9/bits/stl_algo.h:3876)
==45520== by 0x172F94CE: move(std::vector >&) (packages/tests-vg/episode/src/motor_optim.cpp:559)
==45520== by 0x1734919E: bronc(Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Cube, arma::Col, bool, bool, bool, bool) (packages/tests-vg/episode/src/ode_optim.cpp:615)
==45520== by 0x172D7A1C: _episode_bronc (packages/tests-vg/episode/src/RcppExports.cpp:101)
==45520== by 0x49BFC7: R_doDotCall (svn/R-devel/src/main/dotcode.c:646)
==45520== by 0x4D84D1: bcEval (svn/R-devel/src/main/eval.c:7609)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520== by 0x4EB72C: Rf_applyClosure (svn/R-devel/src/main/eval.c:1778)
==45520== Uninitialised value was created by a heap allocation
==45520== at 0x4838E86: operator new(unsigned long) (/builddir/build/BUILD/valgrind-3.15.0/coregrind/m_replacemalloc/vg_replace_malloc.c:344)
==45520== by 0x173504C2: allocate (/usr/include/c++/9/ext/new_allocator.h:114)
==45520== by 0x173504C2: allocate (/usr/include/c++/9/bits/alloc_traits.h:444)
==45520== by 0x173504C2: _M_allocate (/usr/include/c++/9/bits/stl_vector.h:343)
==45520== by 0x173504C2: void std::vector >::_M_realloc_insert(__gnu_cxx::__normal_iterator > >, optim&&) (/usr/include/c++/9/bits/vector.tcc:440)
==45520== by 0x173490CD: push_back (/usr/include/c++/9/bits/stl_vector.h:1201)
==45520== by 0x173490CD: bronc(Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Cube, arma::Col, bool, bool, bool, bool) (packages/tests-vg/episode/src/ode_optim.cpp:601)
==45520== by 0x172D7A1C: _episode_bronc (packages/tests-vg/episode/src/RcppExports.cpp:101)
==45520== by 0x49BFC7: R_doDotCall (svn/R-devel/src/main/dotcode.c:646)
==45520== by 0x4D84D1: bcEval (svn/R-devel/src/main/eval.c:7609)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520== by 0x4EB72C: Rf_applyClosure (svn/R-devel/src/main/eval.c:1778)
==45520== by 0x4DC310: bcEval (svn/R-devel/src/main/eval.c:7021)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520==
==45520== Conditional jump or move depends on uninitialised value(s)
==45520== at 0x172F8083: optim::optimise(__gnu_cxx::__normal_iterator > >) (packages/tests-vg/episode/src/motor_optim.cpp:385)
==45520== by 0x172F8983: optim::optimise() (packages/tests-vg/episode/src/motor_optim.cpp:476)
==45520== by 0x172F94CE: operator() (/usr/include/c++/9/bits/stl_function.h:1248)
==45520== by 0x172F94CE: for_each<__gnu_cxx::__normal_iterator >, std::mem_fun_ref_t > (/usr/include/c++/9/bits/stl_algo.h:3876)
==45520== by 0x172F94CE: move(std::vector >&) (packages/tests-vg/episode/src/motor_optim.cpp:559)
==45520== by 0x1734919E: bronc(Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Cube, arma::Col, bool, bool, bool, bool) (packages/tests-vg/episode/src/ode_optim.cpp:615)
==45520== by 0x172D7A1C: _episode_bronc (packages/tests-vg/episode/src/RcppExports.cpp:101)
==45520== by 0x49BFC7: R_doDotCall (svn/R-devel/src/main/dotcode.c:646)
==45520== by 0x4D84D1: bcEval (svn/R-devel/src/main/eval.c:7609)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520== by 0x4EB72C: Rf_applyClosure (svn/R-devel/src/main/eval.c:1778)
==45520== by 0x4DC310: bcEval (svn/R-devel/src/main/eval.c:7021)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520==
==45520== Conditional jump or move depends on uninitialised value(s)
==45520== at 0x172F8083: optim::optimise(__gnu_cxx::__normal_iterator > >) (packages/tests-vg/episode/src/motor_optim.cpp:385)
==45520== by 0x172F8983: optim::optimise() (packages/tests-vg/episode/src/motor_optim.cpp:476)
==45520== by 0x172F94CE: operator() (/usr/include/c++/9/bits/stl_function.h:1248)
==45520== by 0x172F94CE: for_each<__gnu_cxx::__normal_iterator >, std::mem_fun_ref_t > (/usr/include/c++/9/bits/stl_algo.h:3876)
==45520== by 0x172F94CE: move(std::vector >&) (packages/tests-vg/episode/src/motor_optim.cpp:559)
==45520== by 0x1734B218: bronc(Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Cube, arma::Col, bool, bool, bool, bool) (packages/tests-vg/episode/src/ode_optim.cpp:803)
==45520== by 0x172D7A1C: _episode_bronc (packages/tests-vg/episode/src/RcppExports.cpp:101)
==45520== by 0x49BFC7: R_doDotCall (svn/R-devel/src/main/dotcode.c:646)
==45520== by 0x4D84D1: bcEval (svn/R-devel/src/main/eval.c:7609)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520== by 0x4EB72C: Rf_applyClosure (svn/R-devel/src/main/eval.c:1778)
==45520== by 0x4DC310: bcEval (svn/R-devel/src/main/eval.c:7021)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520==
==45520== Conditional jump or move depends on uninitialised value(s)
==45520== at 0x4C0D05D: __ieee754_log_avx (in /usr/lib64/libm-2.29.so)
==45520== by 0x172F777B: optim::conv_criteria(__gnu_cxx::__normal_iterator > >, double, arma::Col) (packages/tests-vg/episode/src/motor_optim.cpp:319)
==45520== by 0x172F8074: optim::optimise(__gnu_cxx::__normal_iterator > >) (packages/tests-vg/episode/src/motor_optim.cpp:385)
==45520== by 0x172F8983: optim::optimise() (packages/tests-vg/episode/src/motor_optim.cpp:476)
==45520== by 0x172F94CE: operator() (/usr/include/c++/9/bits/stl_function.h:1248)
==45520== by 0x172F94CE: for_each<__gnu_cxx::__normal_iterator >, std::mem_fun_ref_t > (/usr/include/c++/9/bits/stl_algo.h:3876)
==45520== by 0x172F94CE: move(std::vector >&) (packages/tests-vg/episode/src/motor_optim.cpp:559)
==45520== by 0x1734919E: bronc(Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Cube, arma::Col, bool, bool, bool, bool) (packages/tests-vg/episode/src/ode_optim.cpp:615)
==45520== by 0x172D7A1C: _episode_bronc (packages/tests-vg/episode/src/RcppExports.cpp:101)
==45520== by 0x49BFC7: R_doDotCall (svn/R-devel/src/main/dotcode.c:646)
==45520== by 0x4D84D1: bcEval (svn/R-devel/src/main/eval.c:7609)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520== by 0x4EB72C: Rf_applyClosure (svn/R-devel/src/main/eval.c:1778)
==45520== Uninitialised value was created by a heap allocation
==45520== at 0x4838E86: operator new(unsigned long) (/builddir/build/BUILD/valgrind-3.15.0/coregrind/m_replacemalloc/vg_replace_malloc.c:344)
==45520== by 0x173504C2: allocate (/usr/include/c++/9/ext/new_allocator.h:114)
==45520== by 0x173504C2: allocate (/usr/include/c++/9/bits/alloc_traits.h:444)
==45520== by 0x173504C2: _M_allocate (/usr/include/c++/9/bits/stl_vector.h:343)
==45520== by 0x173504C2: void std::vector >::_M_realloc_insert(__gnu_cxx::__normal_iterator > >, optim&&) (/usr/include/c++/9/bits/vector.tcc:440)
==45520== by 0x173490CD: push_back (/usr/include/c++/9/bits/stl_vector.h:1201)
==45520== by 0x173490CD: bronc(Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Cube, arma::Col, bool, bool, bool, bool) (packages/tests-vg/episode/src/ode_optim.cpp:601)
==45520== by 0x172D7A1C: _episode_bronc (packages/tests-vg/episode/src/RcppExports.cpp:101)
==45520== by 0x49BFC7: R_doDotCall (svn/R-devel/src/main/dotcode.c:646)
==45520== by 0x4D84D1: bcEval (svn/R-devel/src/main/eval.c:7609)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520== by 0x4EB72C: Rf_applyClosure (svn/R-devel/src/main/eval.c:1778)
==45520== by 0x4DC310: bcEval (svn/R-devel/src/main/eval.c:7021)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520==
==45520== Conditional jump or move depends on uninitialised value(s)
==45520== at 0x4BB87E3: log@@GLIBC_2.29 (in /usr/lib64/libm-2.29.so)
==45520== by 0x172F777B: optim::conv_criteria(__gnu_cxx::__normal_iterator > >, double, arma::Col) (packages/tests-vg/episode/src/motor_optim.cpp:319)
==45520== by 0x172F8074: optim::optimise(__gnu_cxx::__normal_iterator > >) (packages/tests-vg/episode/src/motor_optim.cpp:385)
==45520== by 0x172F8983: optim::optimise() (packages/tests-vg/episode/src/motor_optim.cpp:476)
==45520== by 0x172F94CE: operator() (/usr/include/c++/9/bits/stl_function.h:1248)
==45520== by 0x172F94CE: for_each<__gnu_cxx::__normal_iterator >, std::mem_fun_ref_t > (/usr/include/c++/9/bits/stl_algo.h:3876)
==45520== by 0x172F94CE: move(std::vector >&) (packages/tests-vg/episode/src/motor_optim.cpp:559)
==45520== by 0x1734919E: bronc(Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Cube, arma::Col, bool, bool, bool, bool) (packages/tests-vg/episode/src/ode_optim.cpp:615)
==45520== by 0x172D7A1C: _episode_bronc (packages/tests-vg/episode/src/RcppExports.cpp:101)
==45520== by 0x49BFC7: R_doDotCall (svn/R-devel/src/main/dotcode.c:646)
==45520== by 0x4D84D1: bcEval (svn/R-devel/src/main/eval.c:7609)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520== by 0x4EB72C: Rf_applyClosure (svn/R-devel/src/main/eval.c:1778)
==45520== Uninitialised value was created by a heap allocation
==45520== at 0x4838E86: operator new(unsigned long) (/builddir/build/BUILD/valgrind-3.15.0/coregrind/m_replacemalloc/vg_replace_malloc.c:344)
==45520== by 0x173504C2: allocate (/usr/include/c++/9/ext/new_allocator.h:114)
==45520== by 0x173504C2: allocate (/usr/include/c++/9/bits/alloc_traits.h:444)
==45520== by 0x173504C2: _M_allocate (/usr/include/c++/9/bits/stl_vector.h:343)
==45520== by 0x173504C2: void std::vector >::_M_realloc_insert(__gnu_cxx::__normal_iterator > >, optim&&) (/usr/include/c++/9/bits/vector.tcc:440)
==45520== by 0x173490CD: push_back (/usr/include/c++/9/bits/stl_vector.h:1201)
==45520== by 0x173490CD: bronc(Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Cube, arma::Col, bool, bool, bool, bool) (packages/tests-vg/episode/src/ode_optim.cpp:601)
==45520== by 0x172D7A1C: _episode_bronc (packages/tests-vg/episode/src/RcppExports.cpp:101)
==45520== by 0x49BFC7: R_doDotCall (svn/R-devel/src/main/dotcode.c:646)
==45520== by 0x4D84D1: bcEval (svn/R-devel/src/main/eval.c:7609)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520== by 0x4EB72C: Rf_applyClosure (svn/R-devel/src/main/eval.c:1778)
==45520== by 0x4DC310: bcEval (svn/R-devel/src/main/eval.c:7021)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520==
==45520== Conditional jump or move depends on uninitialised value(s)
==45520== at 0x4BB87E5: log@@GLIBC_2.29 (in /usr/lib64/libm-2.29.so)
==45520== by 0x172F777B: optim::conv_criteria(__gnu_cxx::__normal_iterator > >, double, arma::Col) (packages/tests-vg/episode/src/motor_optim.cpp:319)
==45520== by 0x172F8074: optim::optimise(__gnu_cxx::__normal_iterator > >) (packages/tests-vg/episode/src/motor_optim.cpp:385)
==45520== by 0x172F8983: optim::optimise() (packages/tests-vg/episode/src/motor_optim.cpp:476)
==45520== by 0x172F94CE: operator() (/usr/include/c++/9/bits/stl_function.h:1248)
==45520== by 0x172F94CE: for_each<__gnu_cxx::__normal_iterator >, std::mem_fun_ref_t > (/usr/include/c++/9/bits/stl_algo.h:3876)
==45520== by 0x172F94CE: move(std::vector >&) (packages/tests-vg/episode/src/motor_optim.cpp:559)
==45520== by 0x1734919E: bronc(Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Cube, arma::Col, bool, bool, bool, bool) (packages/tests-vg/episode/src/ode_optim.cpp:615)
==45520== by 0x172D7A1C: _episode_bronc (packages/tests-vg/episode/src/RcppExports.cpp:101)
==45520== by 0x49BFC7: R_doDotCall (svn/R-devel/src/main/dotcode.c:646)
==45520== by 0x4D84D1: bcEval (svn/R-devel/src/main/eval.c:7609)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520== by 0x4EB72C: Rf_applyClosure (svn/R-devel/src/main/eval.c:1778)
==45520== Uninitialised value was created by a heap allocation
==45520== at 0x4838E86: operator new(unsigned long) (/builddir/build/BUILD/valgrind-3.15.0/coregrind/m_replacemalloc/vg_replace_malloc.c:344)
==45520== by 0x173504C2: allocate (/usr/include/c++/9/ext/new_allocator.h:114)
==45520== by 0x173504C2: allocate (/usr/include/c++/9/bits/alloc_traits.h:444)
==45520== by 0x173504C2: _M_allocate (/usr/include/c++/9/bits/stl_vector.h:343)
==45520== by 0x173504C2: void std::vector >::_M_realloc_insert(__gnu_cxx::__normal_iterator > >, optim&&) (/usr/include/c++/9/bits/vector.tcc:440)
==45520== by 0x173490CD: push_back (/usr/include/c++/9/bits/stl_vector.h:1201)
==45520== by 0x173490CD: bronc(Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Cube, arma::Col, bool, bool, bool, bool) (packages/tests-vg/episode/src/ode_optim.cpp:601)
==45520== by 0x172D7A1C: _episode_bronc (packages/tests-vg/episode/src/RcppExports.cpp:101)
==45520== by 0x49BFC7: R_doDotCall (svn/R-devel/src/main/dotcode.c:646)
==45520== by 0x4D84D1: bcEval (svn/R-devel/src/main/eval.c:7609)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520== by 0x4EB72C: Rf_applyClosure (svn/R-devel/src/main/eval.c:1778)
==45520== by 0x4DC310: bcEval (svn/R-devel/src/main/eval.c:7021)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520==
==45520== Conditional jump or move depends on uninitialised value(s)
==45520== at 0x172F8D2A: optim::optimise() (packages/tests-vg/episode/src/motor_optim.cpp:507)
==45520== by 0x172F94CE: operator() (/usr/include/c++/9/bits/stl_function.h:1248)
==45520== by 0x172F94CE: for_each<__gnu_cxx::__normal_iterator >, std::mem_fun_ref_t > (/usr/include/c++/9/bits/stl_algo.h:3876)
==45520== by 0x172F94CE: move(std::vector >&) (packages/tests-vg/episode/src/motor_optim.cpp:559)
==45520== by 0x1734919E: bronc(Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Cube, arma::Col, bool, bool, bool, bool) (packages/tests-vg/episode/src/ode_optim.cpp:615)
==45520== by 0x172D7A1C: _episode_bronc (packages/tests-vg/episode/src/RcppExports.cpp:101)
==45520== by 0x49BFC7: R_doDotCall (svn/R-devel/src/main/dotcode.c:646)
==45520== by 0x4D84D1: bcEval (svn/R-devel/src/main/eval.c:7609)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520== by 0x4EB72C: Rf_applyClosure (svn/R-devel/src/main/eval.c:1778)
==45520== by 0x4DC310: bcEval (svn/R-devel/src/main/eval.c:7021)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520==
==45520== Conditional jump or move depends on uninitialised value(s)
==45520== at 0x172F8D62: optim::optimise() (packages/tests-vg/episode/src/motor_optim.cpp:510)
==45520== by 0x172F94CE: operator() (/usr/include/c++/9/bits/stl_function.h:1248)
==45520== by 0x172F94CE: for_each<__gnu_cxx::__normal_iterator >, std::mem_fun_ref_t > (/usr/include/c++/9/bits/stl_algo.h:3876)
==45520== by 0x172F94CE: move(std::vector >&) (packages/tests-vg/episode/src/motor_optim.cpp:559)
==45520== by 0x1734919E: bronc(Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Cube, arma::Col, bool, bool, bool, bool) (packages/tests-vg/episode/src/ode_optim.cpp:615)
==45520== by 0x172D7A1C: _episode_bronc (packages/tests-vg/episode/src/RcppExports.cpp:101)
==45520== by 0x49BFC7: R_doDotCall (svn/R-devel/src/main/dotcode.c:646)
==45520== by 0x4D84D1: bcEval (svn/R-devel/src/main/eval.c:7609)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520== by 0x4EB72C: Rf_applyClosure (svn/R-devel/src/main/eval.c:1778)
==45520== by 0x4DC310: bcEval (svn/R-devel/src/main/eval.c:7021)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520==
==45520== Conditional jump or move depends on uninitialised value(s)
==45520== at 0x172F8D2A: optim::optimise() (packages/tests-vg/episode/src/motor_optim.cpp:507)
==45520== by 0x172F94CE: operator() (/usr/include/c++/9/bits/stl_function.h:1248)
==45520== by 0x172F94CE: for_each<__gnu_cxx::__normal_iterator >, std::mem_fun_ref_t > (/usr/include/c++/9/bits/stl_algo.h:3876)
==45520== by 0x172F94CE: move(std::vector >&) (packages/tests-vg/episode/src/motor_optim.cpp:559)
==45520== by 0x1734B218: bronc(Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Cube, arma::Col, bool, bool, bool, bool) (packages/tests-vg/episode/src/ode_optim.cpp:803)
==45520== by 0x172D7A1C: _episode_bronc (packages/tests-vg/episode/src/RcppExports.cpp:101)
==45520== by 0x49BFC7: R_doDotCall (svn/R-devel/src/main/dotcode.c:646)
==45520== by 0x4D84D1: bcEval (svn/R-devel/src/main/eval.c:7609)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520== by 0x4EB72C: Rf_applyClosure (svn/R-devel/src/main/eval.c:1778)
==45520== by 0x4DC310: bcEval (svn/R-devel/src/main/eval.c:7021)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520==
==45520== Conditional jump or move depends on uninitialised value(s)
==45520== at 0x172F8D62: optim::optimise() (packages/tests-vg/episode/src/motor_optim.cpp:510)
==45520== by 0x172F94CE: operator() (/usr/include/c++/9/bits/stl_function.h:1248)
==45520== by 0x172F94CE: for_each<__gnu_cxx::__normal_iterator >, std::mem_fun_ref_t > (/usr/include/c++/9/bits/stl_algo.h:3876)
==45520== by 0x172F94CE: move(std::vector >&) (packages/tests-vg/episode/src/motor_optim.cpp:559)
==45520== by 0x1734B218: bronc(Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Cube, arma::Col, bool, bool, bool, bool) (packages/tests-vg/episode/src/ode_optim.cpp:803)
==45520== by 0x172D7A1C: _episode_bronc (packages/tests-vg/episode/src/RcppExports.cpp:101)
==45520== by 0x49BFC7: R_doDotCall (svn/R-devel/src/main/dotcode.c:646)
==45520== by 0x4D84D1: bcEval (svn/R-devel/src/main/eval.c:7609)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520== by 0x4EB72C: Rf_applyClosure (svn/R-devel/src/main/eval.c:1778)
==45520== by 0x4DC310: bcEval (svn/R-devel/src/main/eval.c:7021)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520==
==45520== Conditional jump or move depends on uninitialised value(s)
==45520== at 0x172F8083: optim::optimise(__gnu_cxx::__normal_iterator > >) (packages/tests-vg/episode/src/motor_optim.cpp:385)
==45520== by 0x172F8983: optim::optimise() (packages/tests-vg/episode/src/motor_optim.cpp:476)
==45520== by 0x172F94CE: operator() (/usr/include/c++/9/bits/stl_function.h:1248)
==45520== by 0x172F94CE: for_each<__gnu_cxx::__normal_iterator >, std::mem_fun_ref_t > (/usr/include/c++/9/bits/stl_algo.h:3876)
==45520== by 0x172F94CE: move(std::vector >&) (packages/tests-vg/episode/src/motor_optim.cpp:559)
==45520== by 0x17346C26: bull(Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Cube, bool) (packages/tests-vg/episode/src/ode_optim.cpp:200)
==45520== by 0x172D5986: _episode_bull (packages/tests-vg/episode/src/RcppExports.cpp:65)
==45520== by 0x49C053: R_doDotCall (svn/R-devel/src/main/dotcode.c:626)
==45520== by 0x4D84D1: bcEval (svn/R-devel/src/main/eval.c:7609)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520== by 0x4EB72C: Rf_applyClosure (svn/R-devel/src/main/eval.c:1778)
==45520== by 0x4E8E6F: Rf_eval (svn/R-devel/src/main/eval.c:811)
==45520== by 0x4ED4F1: do_set (svn/R-devel/src/main/eval.c:2919)
==45520==
==45520== Conditional jump or move depends on uninitialised value(s)
==45520== at 0x172F8D2A: optim::optimise() (packages/tests-vg/episode/src/motor_optim.cpp:507)
==45520== by 0x172F94CE: operator() (/usr/include/c++/9/bits/stl_function.h:1248)
==45520== by 0x172F94CE: for_each<__gnu_cxx::__normal_iterator >, std::mem_fun_ref_t > (/usr/include/c++/9/bits/stl_algo.h:3876)
==45520== by 0x172F94CE: move(std::vector >&) (packages/tests-vg/episode/src/motor_optim.cpp:559)
==45520== by 0x17346C26: bull(Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Cube, bool) (packages/tests-vg/episode/src/ode_optim.cpp:200)
==45520== by 0x172D5986: _episode_bull (packages/tests-vg/episode/src/RcppExports.cpp:65)
==45520== by 0x49C053: R_doDotCall (svn/R-devel/src/main/dotcode.c:626)
==45520== by 0x4D84D1: bcEval (svn/R-devel/src/main/eval.c:7609)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520== by 0x4EB72C: Rf_applyClosure (svn/R-devel/src/main/eval.c:1778)
==45520== by 0x4E8E6F: Rf_eval (svn/R-devel/src/main/eval.c:811)
==45520== by 0x4ED4F1: do_set (svn/R-devel/src/main/eval.c:2919)
==45520== by 0x4E90E2: Rf_eval (svn/R-devel/src/main/eval.c:763)
==45520==
==45520== Conditional jump or move depends on uninitialised value(s)
==45520== at 0x4BEB314: __math_invalid (in /usr/lib64/libm-2.29.so)
==45520== by 0x172F777B: optim::conv_criteria(__gnu_cxx::__normal_iterator > >, double, arma::Col) (packages/tests-vg/episode/src/motor_optim.cpp:319)
==45520== by 0x172F8074: optim::optimise(__gnu_cxx::__normal_iterator > >) (packages/tests-vg/episode/src/motor_optim.cpp:385)
==45520== by 0x172F8983: optim::optimise() (packages/tests-vg/episode/src/motor_optim.cpp:476)
==45520== by 0x172F94CE: operator() (/usr/include/c++/9/bits/stl_function.h:1248)
==45520== by 0x172F94CE: for_each<__gnu_cxx::__normal_iterator >, std::mem_fun_ref_t > (/usr/include/c++/9/bits/stl_algo.h:3876)
==45520== by 0x172F94CE: move(std::vector >&) (packages/tests-vg/episode/src/motor_optim.cpp:559)
==45520== by 0x17346C26: bull(Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Cube, bool) (packages/tests-vg/episode/src/ode_optim.cpp:200)
==45520== by 0x172D5986: _episode_bull (packages/tests-vg/episode/src/RcppExports.cpp:65)
==45520== by 0x49C053: R_doDotCall (svn/R-devel/src/main/dotcode.c:626)
==45520== by 0x4D84D1: bcEval (svn/R-devel/src/main/eval.c:7609)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520== by 0x4EB72C: Rf_applyClosure (svn/R-devel/src/main/eval.c:1778)
==45520== Uninitialised value was created by a heap allocation
==45520== at 0x4838E86: operator new(unsigned long) (/builddir/build/BUILD/valgrind-3.15.0/coregrind/m_replacemalloc/vg_replace_malloc.c:344)
==45520== by 0x173504C2: allocate (/usr/include/c++/9/ext/new_allocator.h:114)
==45520== by 0x173504C2: allocate (/usr/include/c++/9/bits/alloc_traits.h:444)
==45520== by 0x173504C2: _M_allocate (/usr/include/c++/9/bits/stl_vector.h:343)
==45520== by 0x173504C2: void std::vector >::_M_realloc_insert(__gnu_cxx::__normal_iterator > >, optim&&) (/usr/include/c++/9/bits/vector.tcc:440)
==45520== by 0x173465B1: push_back (/usr/include/c++/9/bits/stl_vector.h:1201)
==45520== by 0x173465B1: bull(Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Cube, bool) (packages/tests-vg/episode/src/ode_optim.cpp:139)
==45520== by 0x172D5986: _episode_bull (packages/tests-vg/episode/src/RcppExports.cpp:65)
==45520== by 0x49C053: R_doDotCall (svn/R-devel/src/main/dotcode.c:626)
==45520== by 0x4D84D1: bcEval (svn/R-devel/src/main/eval.c:7609)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520== by 0x4EB72C: Rf_applyClosure (svn/R-devel/src/main/eval.c:1778)
==45520== by 0x4E8E6F: Rf_eval (svn/R-devel/src/main/eval.c:811)
==45520== by 0x4ED4F1: do_set (svn/R-devel/src/main/eval.c:2919)
==45520== by 0x4E90E2: Rf_eval (svn/R-devel/src/main/eval.c:763)
==45520==
==45520== Conditional jump or move depends on uninitialised value(s)
==45520== at 0x172F8D62: optim::optimise() (packages/tests-vg/episode/src/motor_optim.cpp:510)
==45520== by 0x172F94CE: operator() (/usr/include/c++/9/bits/stl_function.h:1248)
==45520== by 0x172F94CE: for_each<__gnu_cxx::__normal_iterator >, std::mem_fun_ref_t > (/usr/include/c++/9/bits/stl_algo.h:3876)
==45520== by 0x172F94CE: move(std::vector >&) (packages/tests-vg/episode/src/motor_optim.cpp:559)
==45520== by 0x17346C26: bull(Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Cube, bool) (packages/tests-vg/episode/src/ode_optim.cpp:200)
==45520== by 0x172D5986: _episode_bull (packages/tests-vg/episode/src/RcppExports.cpp:65)
==45520== by 0x49C053: R_doDotCall (svn/R-devel/src/main/dotcode.c:626)
==45520== by 0x4D84D1: bcEval (svn/R-devel/src/main/eval.c:7609)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520== by 0x4EB72C: Rf_applyClosure (svn/R-devel/src/main/eval.c:1778)
==45520== by 0x4DC310: bcEval (svn/R-devel/src/main/eval.c:7021)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520==
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 84 | SKIPPED: 1 | WARNINGS: 0 | FAILED: 0 ]
>
> proc.time()
user system elapsed
920.018 1.436 923.875
==45520==
==45520== HEAP SUMMARY:
==45520== in use at exit: 211,781,446 bytes in 43,495 blocks
==45520== total heap usage: 11,236,026 allocs, 11,192,531 frees, 3,503,947,530 bytes allocated
==45520==
==45520== 224 bytes in 1 blocks are possibly lost in loss record 101 of 3,591
==45520== at 0x483AE45: memalign (/builddir/build/BUILD/valgrind-3.15.0/coregrind/m_replacemalloc/vg_replace_malloc.c:908)
==45520== by 0x483AF47: posix_memalign (/builddir/build/BUILD/valgrind-3.15.0/coregrind/m_replacemalloc/vg_replace_malloc.c:1072)
==45520== by 0x172E506A: acquire (R-devel/site-library/RcppArmadillo/include/armadillo_bits/memory.hpp:82)
==45520== by 0x172E506A: arma::Mat::init_warm(unsigned int, unsigned int) (R-devel/site-library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:333)
==45520== by 0x172E57CF: set_size (R-devel/site-library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:6551)
==45520== by 0x172E57CF: arma::subview_elem2, arma::Mat >::extract(arma::Mat&, arma::subview_elem2, arma::Mat > const&) (R-devel/site-library/RcppArmadillo/include/armadillo_bits/subview_elem2_meat.hpp:660)
==45520== by 0x1731213F: operator=, arma::Mat > (R-devel/site-library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:2420)
==45520== by 0x1731213F: mak::set_active(__gnu_cxx::__normal_iterator > >) (packages/tests-vg/episode/src/ode_field.cpp:240)
==45520== by 0x17311083: field::set_active() (packages/tests-vg/episode/src/ode_field.cpp:168)
==45520== by 0x173577A0: ode_solve(Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Mat, Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Col, bool, bool) (packages/tests-vg/episode/src/ode_solver.cpp:594)
==45520== by 0x172D6B17: _episode_ode_solve (packages/tests-vg/episode/src/RcppExports.cpp:117)
==45520== by 0x49C053: R_doDotCall (svn/R-devel/src/main/dotcode.c:626)
==45520== by 0x4D84D1: bcEval (svn/R-devel/src/main/eval.c:7609)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520==
==45520== 224 bytes in 1 blocks are possibly lost in loss record 102 of 3,591
==45520== at 0x483AE45: memalign (/builddir/build/BUILD/valgrind-3.15.0/coregrind/m_replacemalloc/vg_replace_malloc.c:908)
==45520== by 0x483AF47: posix_memalign (/builddir/build/BUILD/valgrind-3.15.0/coregrind/m_replacemalloc/vg_replace_malloc.c:1072)
==45520== by 0x172E506A: acquire (R-devel/site-library/RcppArmadillo/include/armadillo_bits/memory.hpp:82)
==45520== by 0x172E506A: arma::Mat::init_warm(unsigned int, unsigned int) (R-devel/site-library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:333)
==45520== by 0x172E5A15: set_size (R-devel/site-library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:6551)
==45520== by 0x172E5A15: arma::subview_elem2, arma::Mat >::extract(arma::Mat&, arma::subview_elem2, arma::Mat > const&) (R-devel/site-library/RcppArmadillo/include/armadillo_bits/subview_elem2_meat.hpp:633)
==45520== by 0x1731217A: operator=, arma::Mat > (R-devel/site-library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:2420)
==45520== by 0x1731217A: mak::set_active(__gnu_cxx::__normal_iterator > >) (packages/tests-vg/episode/src/ode_field.cpp:241)
==45520== by 0x17311083: field::set_active() (packages/tests-vg/episode/src/ode_field.cpp:168)
==45520== by 0x173577A0: ode_solve(Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Mat, Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Col, bool, bool) (packages/tests-vg/episode/src/ode_solver.cpp:594)
==45520== by 0x172D6B17: _episode_ode_solve (packages/tests-vg/episode/src/RcppExports.cpp:117)
==45520== by 0x49C053: R_doDotCall (svn/R-devel/src/main/dotcode.c:626)
==45520== by 0x4D84D1: bcEval (svn/R-devel/src/main/eval.c:7609)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520==
==45520== 368 bytes in 1 blocks are possibly lost in loss record 184 of 3,591
==45520== at 0x4838E86: operator new(unsigned long) (/builddir/build/BUILD/valgrind-3.15.0/coregrind/m_replacemalloc/vg_replace_malloc.c:344)
==45520== by 0x173533A0: rkemp::deep_Clone() (packages/tests-vg/episode/src/ode_solver.cpp:416)
==45520== by 0x17354CC0: create_psolver(Rcpp::Vector<19, Rcpp::PreserveStorage>) (packages/tests-vg/episode/src/ode_solver.cpp:451)
==45520== by 0x173567DD: ode_solve(Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Mat, Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Col, bool, bool) (packages/tests-vg/episode/src/ode_solver.cpp:470)
==45520== by 0x172D6B17: _episode_ode_solve (packages/tests-vg/episode/src/RcppExports.cpp:117)
==45520== by 0x49C053: R_doDotCall (svn/R-devel/src/main/dotcode.c:626)
==45520== by 0x4D84D1: bcEval (svn/R-devel/src/main/eval.c:7609)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520== by 0x4EB72C: Rf_applyClosure (svn/R-devel/src/main/eval.c:1778)
==45520== by 0x4DC310: bcEval (svn/R-devel/src/main/eval.c:7021)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520==
==45520== 384 bytes in 1 blocks are possibly lost in loss record 188 of 3,591
==45520== at 0x483AE45: memalign (/builddir/build/BUILD/valgrind-3.15.0/coregrind/m_replacemalloc/vg_replace_malloc.c:908)
==45520== by 0x483AF47: posix_memalign (/builddir/build/BUILD/valgrind-3.15.0/coregrind/m_replacemalloc/vg_replace_malloc.c:1072)
==45520== by 0x172E4E4F: acquire (R-devel/site-library/RcppArmadillo/include/armadillo_bits/memory.hpp:82)
==45520== by 0x172E4E4F: arma::Mat::init_cold() (R-devel/site-library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:220)
==45520== by 0x173533EB: Mat (R-devel/site-library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:794)
==45520== by 0x173533EB: butcher (packages/tests-vg/episode/src/ode_butcher.h:8)
==45520== by 0x173533EB: rkemp (packages/tests-vg/episode/src/ode_solver.h:68)
==45520== by 0x173533EB: rkemp::deep_Clone() (packages/tests-vg/episode/src/ode_solver.cpp:416)
==45520== by 0x17354CC0: create_psolver(Rcpp::Vector<19, Rcpp::PreserveStorage>) (packages/tests-vg/episode/src/ode_solver.cpp:451)
==45520== by 0x173567DD: ode_solve(Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Mat, Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Col, bool, bool) (packages/tests-vg/episode/src/ode_solver.cpp:470)
==45520== by 0x172D6B17: _episode_ode_solve (packages/tests-vg/episode/src/RcppExports.cpp:117)
==45520== by 0x49C053: R_doDotCall (svn/R-devel/src/main/dotcode.c:626)
==45520== by 0x4D84D1: bcEval (svn/R-devel/src/main/eval.c:7609)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520== by 0x4EB72C: Rf_applyClosure (svn/R-devel/src/main/eval.c:1778)
==45520==
==45520== 416 (192 direct, 224 indirect) bytes in 1 blocks are definitely lost in loss record 198 of 3,591
==45520== at 0x4838E86: operator new(unsigned long) (/builddir/build/BUILD/valgrind-3.15.0/coregrind/m_replacemalloc/vg_replace_malloc.c:344)
==45520== by 0x1733F1C0: create_pmap(std::__cxx11::basic_string, std::allocator >, arma::Mat, arma::Mat) (packages/tests-vg/episode/src/ode_mapping.cpp:233)
==45520== by 0x17342560: numint(arma::Col, arma::Mat, std::__cxx11::basic_string, std::allocator >, arma::Mat, arma::Mat) (packages/tests-vg/episode/src/ode_mapping.cpp:302)
==45520== by 0x172D73AA: _episode_numint (packages/tests-vg/episode/src/RcppExports.cpp:49)
==45520== by 0x49C077: R_doDotCall (svn/R-devel/src/main/dotcode.c:622)
==45520== by 0x4D84D1: bcEval (svn/R-devel/src/main/eval.c:7609)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520== by 0x4EB72C: Rf_applyClosure (svn/R-devel/src/main/eval.c:1778)
==45520== by 0x4E8E6F: Rf_eval (svn/R-devel/src/main/eval.c:811)
==45520== by 0x4ED4F1: do_set (svn/R-devel/src/main/eval.c:2919)
==45520== by 0x4E90E2: Rf_eval (svn/R-devel/src/main/eval.c:763)
==45520==
==45520== 464 bytes in 1 blocks are possibly lost in loss record 233 of 3,591
==45520== at 0x4838E86: operator new(unsigned long) (/builddir/build/BUILD/valgrind-3.15.0/coregrind/m_replacemalloc/vg_replace_malloc.c:344)
==45520== by 0x17311576: mak::deep_Clone() (packages/tests-vg/episode/src/ode_field.cpp:205)
==45520== by 0x17319115: create_pfield(Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Mat&, arma::Mat&, std::vector >&, arma::Mat) (packages/tests-vg/episode/src/ode_field.cpp:512)
==45520== by 0x1735674C: ode_solve(Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Mat, Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Col, bool, bool) (packages/tests-vg/episode/src/ode_solver.cpp:465)
==45520== by 0x172D6B17: _episode_ode_solve (packages/tests-vg/episode/src/RcppExports.cpp:117)
==45520== by 0x49C053: R_doDotCall (svn/R-devel/src/main/dotcode.c:626)
==45520== by 0x4D84D1: bcEval (svn/R-devel/src/main/eval.c:7609)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520== by 0x4EB72C: Rf_applyClosure (svn/R-devel/src/main/eval.c:1778)
==45520== by 0x4DC310: bcEval (svn/R-devel/src/main/eval.c:7021)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520==
==45520== 528 (304 direct, 224 indirect) bytes in 1 blocks are definitely lost in loss record 245 of 3,591
==45520== at 0x4838E86: operator new(unsigned long) (/builddir/build/BUILD/valgrind-3.15.0/coregrind/m_replacemalloc/vg_replace_malloc.c:344)
==45520== by 0x17311794: plk::deep_Clone() (packages/tests-vg/episode/src/ode_field.cpp:265)
==45520== by 0x17319599: create_pfield(Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Mat&, arma::Mat&, std::vector >&, arma::Mat) (packages/tests-vg/episode/src/ode_field.cpp:527)
==45520== by 0x17332E9A: ode_loss::ode_loss(Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Mat&, arma::Mat&, arma::Mat, Rcpp::Nullable >, Rcpp::Vector<19, Rcpp::PreserveStorage>, std::vector >*, likeli*) (packages/tests-vg/episode/src/ode_loss.cpp:45)
==45520== by 0x17333BFE: exact::exact(Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Mat&, arma::Mat&, arma::Mat, Rcpp::Nullable >, Rcpp::Vector<19, Rcpp::PreserveStorage>, std::vector >*, likeli*) (packages/tests-vg/episode/src/ode_loss.cpp:221)
==45520== by 0x173488F0: bronc(Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Cube, arma::Col, bool, bool, bool, bool) (packages/tests-vg/episode/src/ode_optim.cpp:568)
==45520== by 0x172D7A1C: _episode_bronc (packages/tests-vg/episode/src/RcppExports.cpp:101)
==45520== by 0x49BFC7: R_doDotCall (svn/R-devel/src/main/dotcode.c:646)
==45520== by 0x4D84D1: bcEval (svn/R-devel/src/main/eval.c:7609)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520== by 0x4EB72C: Rf_applyClosure (svn/R-devel/src/main/eval.c:1778)
==45520==
==45520== 528 (304 direct, 224 indirect) bytes in 1 blocks are definitely lost in loss record 246 of 3,591
==45520== at 0x4838E86: operator new(unsigned long) (/builddir/build/BUILD/valgrind-3.15.0/coregrind/m_replacemalloc/vg_replace_malloc.c:344)
==45520== by 0x17311794: plk::deep_Clone() (packages/tests-vg/episode/src/ode_field.cpp:265)
==45520== by 0x17319599: create_pfield(Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Mat&, arma::Mat&, std::vector >&, arma::Mat) (packages/tests-vg/episode/src/ode_field.cpp:527)
==45520== by 0x17332E9A: ode_loss::ode_loss(Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Mat&, arma::Mat&, arma::Mat, Rcpp::Nullable >, Rcpp::Vector<19, Rcpp::PreserveStorage>, std::vector >*, likeli*) (packages/tests-vg/episode/src/ode_loss.cpp:45)
==45520== by 0x17333BFE: exact::exact(Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Mat&, arma::Mat&, arma::Mat, Rcpp::Nullable >, Rcpp::Vector<19, Rcpp::PreserveStorage>, std::vector >*, likeli*) (packages/tests-vg/episode/src/ode_loss.cpp:221)
==45520== by 0x17348E8E: bronc(Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Cube, arma::Col, bool, bool, bool, bool) (packages/tests-vg/episode/src/ode_optim.cpp:599)
==45520== by 0x172D7A1C: _episode_bronc (packages/tests-vg/episode/src/RcppExports.cpp:101)
==45520== by 0x49BFC7: R_doDotCall (svn/R-devel/src/main/dotcode.c:646)
==45520== by 0x4D84D1: bcEval (svn/R-devel/src/main/eval.c:7609)
==45520== by 0x4E8D6F: Rf_eval (svn/R-devel/src/main/eval.c:688)
==45520== by 0x4EA976: R_execClosure (svn/R-devel/src/main/eval.c:1852)
==45520== by 0x4EB72C: Rf_applyClosure (svn/R-devel/src/main/eval.c:1778)
==45520==
==45520== 608 bytes in 2 blocks are definitely lost in loss record 267 of 3,591
==45520== at 0x4838E86: operator new(unsigned long) (/builddir/build/BUILD/valgrind-3.15.0/coregrind/m_replacemalloc/vg_replace_malloc.c:344)
==45520== by 0x17311794: plk::deep_Clone() (packages/tests-vg/episode/src/ode_field.cpp:265)
==45520== by 0x17319599: create_pfield(Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Mat&, arma::Mat&, std::vector >&, arma::Mat) (packages/tests-vg/episode/src/ode_field.cpp:527)
==45520== by 0x1731A7BB: ode_field(Rcpp::Vector<19, Rcpp::PreserveStorage>, arma::Col