--- re-building ‘Fast-And-Versatile-NMF.Rmd’ using rmarkdown 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| /data/gannet/ripley/R/test-4.0/RcppArmadillo/include/armadillo_bits/subview_meat.hpp:1223:54: runtime error: reference binding to null pointer of type 'const unsigned int' #0 0x7feba2f65e4e in arma::subview::colptr(unsigned int) /data/gannet/ripley/R/test-4.0/RcppArmadillo/include/armadillo_bits/subview_meat.hpp:1223 #1 0x7feba2f65e4e in arma::subview_col::subview_col(arma::Mat const&, unsigned int) /data/gannet/ripley/R/test-4.0/RcppArmadillo/include/armadillo_bits/subview_meat.hpp:3047 #2 0x7feba2f65e4e in arma::Mat::col(unsigned int) const /data/gannet/ripley/R/test-4.0/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:2956 #3 0x7feba2f65e4e in update(arma::Mat&, arma::Mat const&, arma::Mat const&, arma::Mat const&, arma::Col const&, unsigned int, double, int, int) [clone ._omp_fn.0] /data/gannet/ripley/R/packages/tests-gcc-SAN/NNLM/src/update_with_missing.cpp:42 #4 0x7febb57d04b5 in GOMP_parallel (/lib64/libgomp.so.1+0x124b5) #5 0x7feba2f3f720 in update(arma::Mat&, arma::Mat const&, arma::Mat const&, arma::Mat const&, arma::Col const&, unsigned int, double, int, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/NNLM/src/update_with_missing.cpp:29 #6 0x7feba2ef1001 in c_nnmf(arma::Mat const&, unsigned int, arma::Mat, arma::Mat, arma::Mat, arma::Mat, arma::Col const&, arma::Col const&, unsigned int, double, int, int, bool, unsigned int, double, int, unsigned int) /data/gannet/ripley/R/packages/tests-gcc-SAN/NNLM/src/nnmf.cpp:131 #7 0x7feba2e6f052 in _NNLM_c_nnmf /data/gannet/ripley/R/packages/tests-gcc-SAN/NNLM/src/RcppExports.cpp:51 #8 0x5781e9 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:683 #9 0x58094c in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1280 #10 0x61ced1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7054 #11 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #12 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #13 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #14 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #15 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #16 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #17 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #18 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #19 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #20 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #21 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #22 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #23 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #24 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #25 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #26 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #27 0x66a3d8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:811 #28 0x677d91 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2920 #29 0x66a8cc in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:763 #30 0x67ac56 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3295 #31 0x61ced1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7054 #32 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #33 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #34 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #35 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #36 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #37 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #38 0x66b09f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:711 #39 0x67c87c in do_withVisible /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3347 #40 0x714f9f in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1379 #41 0x62ccd1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7074 #42 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #43 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #44 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #45 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #46 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #47 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #48 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #49 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #50 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #51 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #52 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #53 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #54 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #55 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #56 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #57 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #58 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #59 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #60 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #61 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #62 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #63 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #64 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #65 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #66 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #67 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #68 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #69 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #70 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #71 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #72 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #73 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #74 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #75 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #76 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #77 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #78 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #79 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #80 0x66a3d8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:811 #81 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #82 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #83 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #84 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #85 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #86 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #87 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #88 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #89 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #90 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #91 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #92 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #93 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #94 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #95 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #96 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #97 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #98 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #99 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #100 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #101 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #102 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #103 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #104 0x71a8bb in dispatchMethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:436 #105 0x71b3b6 in Rf_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:476 #106 0x71bf13 in do_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:565 #107 0x62ccd1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7074 #108 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #109 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #110 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #111 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #112 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #113 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #114 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #115 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #116 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #117 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #118 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #119 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #120 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #121 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #122 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #123 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #124 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #125 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #126 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #127 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #128 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #129 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #130 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #131 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #132 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #133 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #134 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #135 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #136 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #137 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #138 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #139 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #140 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #141 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #142 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #143 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #144 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #145 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #146 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #147 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #148 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #149 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #150 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #151 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #152 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #153 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #154 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #155 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #156 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #157 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #158 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #159 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #160 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #161 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #162 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #163 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #164 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #165 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #166 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #167 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #168 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #169 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #170 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #171 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #172 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #173 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #174 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #175 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #176 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #177 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #178 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #179 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #180 0x66a3d8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:811 #181 0x6e846d in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #182 0x6e846d in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:200 #183 0x6e8b68 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #184 0x6e8cb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1113 #185 0x419388 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #186 0x7febb4c92f42 in __libc_start_main (/lib64/libc.so.6+0x23f42) #187 0x41bacd in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41bacd) /data/gannet/ripley/R/test-4.0/RcppArmadillo/include/armadillo_bits/access.hpp:26:100: runtime error: reference binding to null pointer of type 'unsigned int' #0 0x7feba2f66450 in unsigned int& arma::access::rw(unsigned int const&) /data/gannet/ripley/R/test-4.0/RcppArmadillo/include/armadillo_bits/access.hpp:26 #1 0x7feba2f66450 in arma::subview::colptr(unsigned int) /data/gannet/ripley/R/test-4.0/RcppArmadillo/include/armadillo_bits/subview_meat.hpp:1223 #2 0x7feba2f66450 in arma::subview_col::subview_col(arma::Mat const&, unsigned int) /data/gannet/ripley/R/test-4.0/RcppArmadillo/include/armadillo_bits/subview_meat.hpp:3047 #3 0x7feba2f66450 in arma::Mat::col(unsigned int) const /data/gannet/ripley/R/test-4.0/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:2956 #4 0x7feba2f66450 in update(arma::Mat&, arma::Mat const&, arma::Mat const&, arma::Mat const&, arma::Col const&, unsigned int, double, int, int) [clone ._omp_fn.0] /data/gannet/ripley/R/packages/tests-gcc-SAN/NNLM/src/update_with_missing.cpp:42 #5 0x7febb57d04b5 in GOMP_parallel (/lib64/libgomp.so.1+0x124b5) #6 0x7feba2f3f720 in update(arma::Mat&, arma::Mat const&, arma::Mat const&, arma::Mat const&, arma::Col const&, unsigned int, double, int, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/NNLM/src/update_with_missing.cpp:29 #7 0x7feba2ef1001 in c_nnmf(arma::Mat const&, unsigned int, arma::Mat, arma::Mat, arma::Mat, arma::Mat, arma::Col const&, arma::Col const&, unsigned int, double, int, int, bool, unsigned int, double, int, unsigned int) /data/gannet/ripley/R/packages/tests-gcc-SAN/NNLM/src/nnmf.cpp:131 #8 0x7feba2e6f052 in _NNLM_c_nnmf /data/gannet/ripley/R/packages/tests-gcc-SAN/NNLM/src/RcppExports.cpp:51 #9 0x5781e9 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:683 #10 0x58094c in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1280 #11 0x61ced1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7054 #12 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #13 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #14 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #15 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #16 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #17 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #18 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #19 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #20 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #21 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #22 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #23 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #24 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #25 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #26 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #27 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #28 0x66a3d8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:811 #29 0x677d91 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2920 #30 0x66a8cc in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:763 #31 0x67ac56 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3295 #32 0x61ced1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7054 #33 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #34 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #35 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #36 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #37 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #38 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #39 0x66b09f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:711 #40 0x67c87c in do_withVisible /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3347 #41 0x714f9f in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1379 #42 0x62ccd1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7074 #43 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #44 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #45 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #46 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #47 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #48 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #49 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #50 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #51 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #52 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #53 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #54 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #55 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #56 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #57 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #58 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #59 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #60 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #61 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #62 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #63 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #64 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #65 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #66 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #67 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #68 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #69 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #70 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #71 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #72 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #73 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #74 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #75 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #76 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #77 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #78 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #79 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #80 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #81 0x66a3d8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:811 #82 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #83 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #84 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #85 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #86 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #87 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #88 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #89 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #90 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #91 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #92 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #93 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #94 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #95 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #96 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #97 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #98 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #99 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #100 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #101 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #102 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #103 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #104 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #105 0x71a8bb in dispatchMethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:436 #106 0x71b3b6 in Rf_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:476 #107 0x71bf13 in do_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:565 #108 0x62ccd1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7074 #109 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #110 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #111 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #112 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #113 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #114 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #115 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #116 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #117 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #118 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #119 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #120 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #121 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #122 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #123 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #124 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #125 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #126 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #127 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #128 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #129 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #130 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #131 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #132 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #133 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #134 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #135 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #136 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #137 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #138 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #139 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #140 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #141 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #142 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #143 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #144 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #145 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #146 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #147 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #148 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #149 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #150 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #151 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #152 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #153 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #154 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #155 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #156 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #157 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #158 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #159 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #160 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #161 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #162 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #163 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #164 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #165 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #166 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #167 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #168 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #169 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #170 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #171 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #172 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #173 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #174 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #175 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #176 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #177 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #178 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #179 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #180 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #181 0x66a3d8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:811 #182 0x6e846d in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #183 0x6e846d in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:200 #184 0x6e8b68 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #185 0x6e8cb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1113 #186 0x419388 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #187 0x7febb4c92f42 in __libc_start_main (/lib64/libc.so.6+0x23f42) #188 0x41bacd in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41bacd) **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| /data/gannet/ripley/R/test-4.0/RcppArmadillo/include/armadillo_bits/subview_meat.hpp:1223:54: runtime error: reference binding to null pointer of type 'const unsigned int' #0 0x7feba2f661e9 in arma::subview::colptr(unsigned int) /data/gannet/ripley/R/test-4.0/RcppArmadillo/include/armadillo_bits/subview_meat.hpp:1223 #1 0x7feba2f661e9 in arma::subview_col::subview_col(arma::Mat const&, unsigned int) /data/gannet/ripley/R/test-4.0/RcppArmadillo/include/armadillo_bits/subview_meat.hpp:3047 #2 0x7feba2f661e9 in arma::Mat::col(unsigned int) const /data/gannet/ripley/R/test-4.0/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:2956 #3 0x7feba2f661e9 in update(arma::Mat&, arma::Mat const&, arma::Mat const&, arma::Mat const&, arma::Col const&, unsigned int, double, int, int) [clone ._omp_fn.0] /data/gannet/ripley/R/packages/tests-gcc-SAN/NNLM/src/update_with_missing.cpp:45 #4 0x7febb57d04b5 in GOMP_parallel (/lib64/libgomp.so.1+0x124b5) #5 0x7feba2f3f720 in update(arma::Mat&, arma::Mat const&, arma::Mat const&, arma::Mat const&, arma::Col const&, unsigned int, double, int, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/NNLM/src/update_with_missing.cpp:29 #6 0x7feba2ef1001 in c_nnmf(arma::Mat const&, unsigned int, arma::Mat, arma::Mat, arma::Mat, arma::Mat, arma::Col const&, arma::Col const&, unsigned int, double, int, int, bool, unsigned int, double, int, unsigned int) /data/gannet/ripley/R/packages/tests-gcc-SAN/NNLM/src/nnmf.cpp:131 #7 0x7feba2e6f052 in _NNLM_c_nnmf /data/gannet/ripley/R/packages/tests-gcc-SAN/NNLM/src/RcppExports.cpp:51 #8 0x5781e9 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:683 #9 0x58094c in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1280 #10 0x61ced1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7054 #11 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #12 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #13 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #14 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #15 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #16 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #17 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #18 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #19 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #20 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #21 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #22 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #23 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #24 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #25 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #26 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #27 0x66a3d8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:811 #28 0x677d91 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2920 #29 0x66a8cc in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:763 #30 0x67ac56 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3295 #31 0x61ced1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7054 #32 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #33 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #34 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #35 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #36 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #37 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #38 0x66b09f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:711 #39 0x67c87c in do_withVisible /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3347 #40 0x714f9f in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1379 #41 0x62ccd1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7074 #42 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #43 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #44 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #45 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #46 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #47 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #48 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #49 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #50 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #51 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #52 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #53 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #54 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #55 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #56 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #57 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #58 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #59 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #60 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #61 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #62 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #63 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #64 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #65 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #66 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #67 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #68 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #69 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #70 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #71 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #72 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #73 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #74 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #75 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #76 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #77 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #78 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #79 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #80 0x66a3d8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:811 #81 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #82 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #83 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #84 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #85 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #86 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #87 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #88 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #89 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #90 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #91 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #92 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #93 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #94 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #95 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #96 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #97 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #98 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #99 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #100 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #101 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #102 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #103 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #104 0x71a8bb in dispatchMethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:436 #105 0x71b3b6 in Rf_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:476 #106 0x71bf13 in do_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:565 #107 0x62ccd1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7074 #108 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #109 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #110 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #111 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #112 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #113 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #114 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #115 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #116 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #117 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #118 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #119 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #120 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #121 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #122 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #123 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #124 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #125 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #126 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #127 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #128 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #129 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #130 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #131 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #132 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #133 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #134 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #135 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #136 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #137 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #138 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #139 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #140 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #141 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #142 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #143 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #144 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #145 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #146 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #147 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #148 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #149 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #150 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #151 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #152 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #153 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #154 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #155 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #156 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #157 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #158 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #159 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #160 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #161 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #162 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #163 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #164 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #165 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #166 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #167 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #168 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #169 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #170 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #171 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #172 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #173 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #174 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #175 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #176 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #177 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #178 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #179 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #180 0x66a3d8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:811 #181 0x6e846d in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #182 0x6e846d in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:200 #183 0x6e8b68 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #184 0x6e8cb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1113 #185 0x419388 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #186 0x7febb4c92f42 in __libc_start_main (/lib64/libc.so.6+0x23f42) #187 0x41bacd in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41bacd) /data/gannet/ripley/R/test-4.0/RcppArmadillo/include/armadillo_bits/access.hpp:26:100: runtime error: reference binding to null pointer of type 'unsigned int' #0 0x7feba2f66178 in unsigned int& arma::access::rw(unsigned int const&) /data/gannet/ripley/R/test-4.0/RcppArmadillo/include/armadillo_bits/access.hpp:26 #1 0x7feba2f66178 in arma::subview::colptr(unsigned int) /data/gannet/ripley/R/test-4.0/RcppArmadillo/include/armadillo_bits/subview_meat.hpp:1223 #2 0x7feba2f66178 in arma::subview_col::subview_col(arma::Mat const&, unsigned int) /data/gannet/ripley/R/test-4.0/RcppArmadillo/include/armadillo_bits/subview_meat.hpp:3047 #3 0x7feba2f66178 in arma::Mat::col(unsigned int) const /data/gannet/ripley/R/test-4.0/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:2956 #4 0x7feba2f66178 in update(arma::Mat&, arma::Mat const&, arma::Mat const&, arma::Mat const&, arma::Col const&, unsigned int, double, int, int) [clone ._omp_fn.0] /data/gannet/ripley/R/packages/tests-gcc-SAN/NNLM/src/update_with_missing.cpp:45 #5 0x7febb57d04b5 in GOMP_parallel (/lib64/libgomp.so.1+0x124b5) #6 0x7feba2f3f720 in update(arma::Mat&, arma::Mat const&, arma::Mat const&, arma::Mat const&, arma::Col const&, unsigned int, double, int, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/NNLM/src/update_with_missing.cpp:29 #7 0x7feba2ef1001 in c_nnmf(arma::Mat const&, unsigned int, arma::Mat, arma::Mat, arma::Mat, arma::Mat, arma::Col const&, arma::Col const&, unsigned int, double, int, int, bool, unsigned int, double, int, unsigned int) /data/gannet/ripley/R/packages/tests-gcc-SAN/NNLM/src/nnmf.cpp:131 #8 0x7feba2e6f052 in _NNLM_c_nnmf /data/gannet/ripley/R/packages/tests-gcc-SAN/NNLM/src/RcppExports.cpp:51 #9 0x5781e9 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:683 #10 0x58094c in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1280 #11 0x61ced1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7054 #12 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #13 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #14 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #15 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #16 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #17 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #18 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #19 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #20 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #21 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #22 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #23 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #24 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #25 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #26 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #27 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #28 0x66a3d8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:811 #29 0x677d91 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2920 #30 0x66a8cc in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:763 #31 0x67ac56 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3295 #32 0x61ced1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7054 #33 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #34 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #35 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #36 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #37 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #38 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #39 0x66b09f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:711 #40 0x67c87c in do_withVisible /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3347 #41 0x714f9f in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1379 #42 0x62ccd1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7074 #43 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #44 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #45 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #46 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #47 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #48 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #49 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #50 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #51 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #52 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #53 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #54 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #55 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #56 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #57 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #58 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #59 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #60 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #61 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #62 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #63 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #64 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #65 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #66 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #67 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #68 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #69 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #70 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #71 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #72 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #73 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #74 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #75 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #76 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #77 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #78 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #79 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #80 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #81 0x66a3d8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:811 #82 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #83 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #84 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #85 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #86 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #87 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #88 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #89 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #90 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #91 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #92 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #93 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #94 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #95 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #96 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #97 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #98 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #99 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #100 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #101 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #102 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #103 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #104 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #105 0x71a8bb in dispatchMethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:436 #106 0x71b3b6 in Rf_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:476 #107 0x71bf13 in do_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:565 #108 0x62ccd1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7074 #109 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #110 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #111 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #112 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #113 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #114 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #115 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #116 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #117 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #118 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #119 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #120 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #121 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #122 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #123 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #124 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #125 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #126 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #127 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #128 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #129 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #130 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #131 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #132 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #133 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #134 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #135 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #136 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #137 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #138 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #139 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #140 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #141 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #142 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #143 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #144 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #145 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #146 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #147 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #148 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #149 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #150 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #151 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #152 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #153 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #154 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #155 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #156 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #157 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #158 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #159 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #160 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #161 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #162 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #163 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #164 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #165 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #166 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #167 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #168 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #169 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #170 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #171 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #172 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #173 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #174 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #175 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #176 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #177 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #178 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #179 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #180 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #181 0x66a3d8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:811 #182 0x6e846d in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #183 0x6e846d in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:200 #184 0x6e8b68 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #185 0x6e8cb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1113 #186 0x419388 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #187 0x7febb4c92f42 in __libc_start_main (/lib64/libc.so.6+0x23f42) #188 0x41bacd in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41bacd) **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| /data/gannet/ripley/R/test-4.0/RcppArmadillo/include/armadillo_bits/subview_meat.hpp:1223:54: runtime error: reference binding to null pointer of type 'const unsigned int' #0 0x7feba2f678d5 in arma::subview::colptr(unsigned int) /data/gannet/ripley/R/test-4.0/RcppArmadillo/include/armadillo_bits/subview_meat.hpp:1223 #1 0x7feba2f678d5 in arma::subview_col::subview_col(arma::Mat const&, unsigned int) /data/gannet/ripley/R/test-4.0/RcppArmadillo/include/armadillo_bits/subview_meat.hpp:3047 #2 0x7feba2f678d5 in arma::Mat::col(unsigned int) const /data/gannet/ripley/R/test-4.0/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:2956 #3 0x7feba2f678d5 in update(arma::Mat&, arma::Mat const&, arma::Mat const&, arma::Mat const&, arma::Col const&, unsigned int, double, int, int) [clone ._omp_fn.0] /data/gannet/ripley/R/packages/tests-gcc-SAN/NNLM/src/update_with_missing.cpp:47 #4 0x7febb57d04b5 in GOMP_parallel (/lib64/libgomp.so.1+0x124b5) #5 0x7feba2f3f720 in update(arma::Mat&, arma::Mat const&, arma::Mat const&, arma::Mat const&, arma::Col const&, unsigned int, double, int, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/NNLM/src/update_with_missing.cpp:29 #6 0x7feba2ef1001 in c_nnmf(arma::Mat const&, unsigned int, arma::Mat, arma::Mat, arma::Mat, arma::Mat, arma::Col const&, arma::Col const&, unsigned int, double, int, int, bool, unsigned int, double, int, unsigned int) /data/gannet/ripley/R/packages/tests-gcc-SAN/NNLM/src/nnmf.cpp:131 #7 0x7feba2e6f052 in _NNLM_c_nnmf /data/gannet/ripley/R/packages/tests-gcc-SAN/NNLM/src/RcppExports.cpp:51 #8 0x5781e9 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:683 #9 0x58094c in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1280 #10 0x61ced1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7054 #11 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #12 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #13 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #14 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #15 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #16 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #17 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #18 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #19 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #20 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #21 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #22 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #23 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #24 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #25 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #26 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #27 0x66a3d8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:811 #28 0x677d91 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2920 #29 0x66a8cc in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:763 #30 0x67ac56 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3295 #31 0x61ced1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7054 #32 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #33 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #34 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #35 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #36 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #37 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #38 0x66b09f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:711 #39 0x67c87c in do_withVisible /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3347 #40 0x714f9f in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1379 #41 0x62ccd1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7074 #42 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #43 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #44 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #45 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #46 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #47 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #48 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #49 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #50 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #51 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #52 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #53 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #54 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #55 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #56 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #57 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #58 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #59 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #60 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #61 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #62 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #63 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #64 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #65 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #66 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #67 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #68 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #69 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #70 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #71 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #72 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #73 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #74 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #75 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #76 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #77 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #78 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #79 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #80 0x66a3d8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:811 #81 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #82 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #83 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #84 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #85 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #86 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #87 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #88 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #89 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #90 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #91 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #92 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #93 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #94 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #95 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #96 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #97 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #98 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #99 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #100 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #101 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #102 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #103 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #104 0x71a8bb in dispatchMethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:436 #105 0x71b3b6 in Rf_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:476 #106 0x71bf13 in do_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:565 #107 0x62ccd1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7074 #108 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #109 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #110 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #111 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #112 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #113 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #114 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #115 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #116 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #117 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #118 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #119 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #120 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #121 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #122 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #123 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #124 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #125 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #126 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #127 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #128 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #129 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #130 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #131 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #132 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #133 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #134 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #135 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #136 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #137 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #138 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #139 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #140 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #141 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #142 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #143 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #144 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #145 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #146 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #147 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #148 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #149 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #150 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #151 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #152 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #153 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #154 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #155 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #156 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #157 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #158 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #159 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #160 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #161 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #162 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #163 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #164 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #165 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #166 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #167 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #168 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #169 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #170 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #171 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #172 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #173 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #174 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #175 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #176 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #177 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #178 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #179 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #180 0x66a3d8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:811 #181 0x6e846d in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #182 0x6e846d in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:200 #183 0x6e8b68 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #184 0x6e8cb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1113 #185 0x419388 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #186 0x7febb4c92f42 in __libc_start_main (/lib64/libc.so.6+0x23f42) #187 0x41bacd in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41bacd) /data/gannet/ripley/R/test-4.0/RcppArmadillo/include/armadillo_bits/access.hpp:26:100: runtime error: reference binding to null pointer of type 'unsigned int' #0 0x7feba2f6782c in unsigned int& arma::access::rw(unsigned int const&) /data/gannet/ripley/R/test-4.0/RcppArmadillo/include/armadillo_bits/access.hpp:26 #1 0x7feba2f6782c in arma::subview::colptr(unsigned int) /data/gannet/ripley/R/test-4.0/RcppArmadillo/include/armadillo_bits/subview_meat.hpp:1223 #2 0x7feba2f6782c in arma::subview_col::subview_col(arma::Mat const&, unsigned int) /data/gannet/ripley/R/test-4.0/RcppArmadillo/include/armadillo_bits/subview_meat.hpp:3047 #3 0x7feba2f6782c in arma::Mat::col(unsigned int) const /data/gannet/ripley/R/test-4.0/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:2956 #4 0x7feba2f6782c in update(arma::Mat&, arma::Mat const&, arma::Mat const&, arma::Mat const&, arma::Col const&, unsigned int, double, int, int) [clone ._omp_fn.0] /data/gannet/ripley/R/packages/tests-gcc-SAN/NNLM/src/update_with_missing.cpp:47 #5 0x7febb57d04b5 in GOMP_parallel (/lib64/libgomp.so.1+0x124b5) #6 0x7feba2f3f720 in update(arma::Mat&, arma::Mat const&, arma::Mat const&, arma::Mat const&, arma::Col const&, unsigned int, double, int, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/NNLM/src/update_with_missing.cpp:29 #7 0x7feba2ef1001 in c_nnmf(arma::Mat const&, unsigned int, arma::Mat, arma::Mat, arma::Mat, arma::Mat, arma::Col const&, arma::Col const&, unsigned int, double, int, int, bool, unsigned int, double, int, unsigned int) /data/gannet/ripley/R/packages/tests-gcc-SAN/NNLM/src/nnmf.cpp:131 #8 0x7feba2e6f052 in _NNLM_c_nnmf /data/gannet/ripley/R/packages/tests-gcc-SAN/NNLM/src/RcppExports.cpp:51 #9 0x5781e9 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:683 #10 0x58094c in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1280 #11 0x61ced1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7054 #12 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #13 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #14 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #15 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #16 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #17 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #18 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #19 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #20 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #21 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #22 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #23 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #24 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #25 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #26 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #27 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #28 0x66a3d8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:811 #29 0x677d91 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2920 #30 0x66a8cc in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:763 #31 0x67ac56 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3295 #32 0x61ced1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7054 #33 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #34 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #35 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #36 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #37 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #38 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #39 0x66b09f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:711 #40 0x67c87c in do_withVisible /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3347 #41 0x714f9f in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1379 #42 0x62ccd1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7074 #43 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #44 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #45 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #46 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #47 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #48 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #49 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #50 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #51 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #52 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #53 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #54 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #55 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #56 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #57 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #58 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #59 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #60 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #61 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #62 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #63 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #64 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #65 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #66 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #67 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #68 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #69 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #70 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #71 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #72 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #73 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #74 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #75 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #76 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #77 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #78 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #79 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #80 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #81 0x66a3d8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:811 #82 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #83 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #84 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #85 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #86 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #87 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #88 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #89 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #90 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #91 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #92 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #93 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #94 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #95 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #96 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #97 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #98 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #99 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #100 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #101 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #102 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #103 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #104 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #105 0x71a8bb in dispatchMethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:436 #106 0x71b3b6 in Rf_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:476 #107 0x71bf13 in do_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:565 #108 0x62ccd1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7074 #109 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #110 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #111 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #112 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #113 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #114 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #115 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #116 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #117 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #118 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #119 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #120 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #121 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #122 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #123 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #124 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #125 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #126 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #127 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #128 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #129 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #130 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #131 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #132 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #133 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #134 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #135 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #136 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #137 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #138 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #139 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #140 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #141 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #142 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #143 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #144 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #145 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #146 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #147 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #148 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #149 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #150 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #151 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #152 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #153 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #154 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #155 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #156 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #157 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #158 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #159 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #160 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #161 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #162 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #163 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #164 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #165 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #166 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #167 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #168 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #169 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #170 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #171 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #172 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #173 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #174 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #175 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #176 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #177 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #178 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #179 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #180 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #181 0x66a3d8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:811 #182 0x6e846d in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #183 0x6e846d in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:200 #184 0x6e8b68 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #185 0x6e8cb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1113 #186 0x419388 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #187 0x7febb4c92f42 in __libc_start_main (/lib64/libc.so.6+0x23f42) #188 0x41bacd in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41bacd) **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| /data/gannet/ripley/R/test-4.0/RcppArmadillo/include/armadillo_bits/subview_meat.hpp:1223:54: runtime error: reference binding to null pointer of type 'const unsigned int' #0 0x7feba2f680fb in arma::subview::colptr(unsigned int) /data/gannet/ripley/R/test-4.0/RcppArmadillo/include/armadillo_bits/subview_meat.hpp:1223 #1 0x7feba2f680fb in arma::subview_col::subview_col(arma::Mat const&, unsigned int) /data/gannet/ripley/R/test-4.0/RcppArmadillo/include/armadillo_bits/subview_meat.hpp:3047 #2 0x7feba2f680fb in arma::Mat::col(unsigned int) const /data/gannet/ripley/R/test-4.0/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:2956 #3 0x7feba2f680fb in update(arma::Mat&, arma::Mat const&, arma::Mat const&, arma::Mat const&, arma::Col const&, unsigned int, double, int, int) [clone ._omp_fn.0] /data/gannet/ripley/R/packages/tests-gcc-SAN/NNLM/src/update_with_missing.cpp:49 #4 0x7febb57d04b5 in GOMP_parallel (/lib64/libgomp.so.1+0x124b5) #5 0x7feba2f3f720 in update(arma::Mat&, arma::Mat const&, arma::Mat const&, arma::Mat const&, arma::Col const&, unsigned int, double, int, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/NNLM/src/update_with_missing.cpp:29 #6 0x7feba2ef1001 in c_nnmf(arma::Mat const&, unsigned int, arma::Mat, arma::Mat, arma::Mat, arma::Mat, arma::Col const&, arma::Col const&, unsigned int, double, int, int, bool, unsigned int, double, int, unsigned int) /data/gannet/ripley/R/packages/tests-gcc-SAN/NNLM/src/nnmf.cpp:131 #7 0x7feba2e6f052 in _NNLM_c_nnmf /data/gannet/ripley/R/packages/tests-gcc-SAN/NNLM/src/RcppExports.cpp:51 #8 0x5781e9 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:683 #9 0x58094c in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1280 #10 0x61ced1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7054 #11 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #12 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #13 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #14 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #15 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #16 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #17 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #18 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #19 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #20 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #21 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #22 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #23 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #24 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #25 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #26 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #27 0x66a3d8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:811 #28 0x677d91 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2920 #29 0x66a8cc in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:763 #30 0x67ac56 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3295 #31 0x61ced1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7054 #32 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #33 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #34 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #35 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #36 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #37 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #38 0x66b09f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:711 #39 0x67c87c in do_withVisible /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3347 #40 0x714f9f in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1379 #41 0x62ccd1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7074 #42 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #43 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #44 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #45 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #46 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #47 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #48 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #49 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #50 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #51 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #52 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #53 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #54 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #55 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #56 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #57 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #58 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #59 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #60 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #61 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #62 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #63 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #64 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #65 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #66 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #67 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #68 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #69 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #70 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #71 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #72 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #73 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #74 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #75 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #76 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #77 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #78 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #79 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #80 0x66a3d8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:811 #81 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #82 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #83 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #84 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #85 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #86 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #87 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #88 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #89 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #90 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #91 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #92 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #93 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #94 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #95 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #96 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #97 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #98 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #99 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #100 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #101 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #102 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #103 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #104 0x71a8bb in dispatchMethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:436 #105 0x71b3b6 in Rf_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:476 #106 0x71bf13 in do_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:565 #107 0x62ccd1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7074 #108 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #109 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #110 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #111 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #112 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #113 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #114 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #115 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #116 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #117 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #118 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #119 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #120 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #121 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #122 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #123 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #124 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #125 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #126 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #127 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #128 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #129 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #130 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #131 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #132 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #133 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #134 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #135 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #136 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #137 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #138 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #139 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #140 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #141 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #142 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #143 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #144 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #145 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #146 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #147 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #148 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #149 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #150 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #151 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #152 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #153 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #154 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #155 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #156 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #157 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #158 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #159 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #160 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #161 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #162 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #163 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #164 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #165 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #166 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #167 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #168 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #169 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #170 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #171 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #172 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #173 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #174 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #175 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #176 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #177 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #178 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #179 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #180 0x66a3d8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:811 #181 0x6e846d in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #182 0x6e846d in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:200 #183 0x6e8b68 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #184 0x6e8cb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1113 #185 0x419388 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #186 0x7febb4c92f42 in __libc_start_main (/lib64/libc.so.6+0x23f42) #187 0x41bacd in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41bacd) /data/gannet/ripley/R/test-4.0/RcppArmadillo/include/armadillo_bits/access.hpp:26:100: runtime error: reference binding to null pointer of type 'unsigned int' #0 0x7feba2f68052 in unsigned int& arma::access::rw(unsigned int const&) /data/gannet/ripley/R/test-4.0/RcppArmadillo/include/armadillo_bits/access.hpp:26 #1 0x7feba2f68052 in arma::subview::colptr(unsigned int) /data/gannet/ripley/R/test-4.0/RcppArmadillo/include/armadillo_bits/subview_meat.hpp:1223 #2 0x7feba2f68052 in arma::subview_col::subview_col(arma::Mat const&, unsigned int) /data/gannet/ripley/R/test-4.0/RcppArmadillo/include/armadillo_bits/subview_meat.hpp:3047 #3 0x7feba2f68052 in arma::Mat::col(unsigned int) const /data/gannet/ripley/R/test-4.0/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:2956 #4 0x7feba2f68052 in update(arma::Mat&, arma::Mat const&, arma::Mat const&, arma::Mat const&, arma::Col const&, unsigned int, double, int, int) [clone ._omp_fn.0] /data/gannet/ripley/R/packages/tests-gcc-SAN/NNLM/src/update_with_missing.cpp:49 #5 0x7febb57d04b5 in GOMP_parallel (/lib64/libgomp.so.1+0x124b5) #6 0x7feba2f3f720 in update(arma::Mat&, arma::Mat const&, arma::Mat const&, arma::Mat const&, arma::Col const&, unsigned int, double, int, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/NNLM/src/update_with_missing.cpp:29 #7 0x7feba2ef1001 in c_nnmf(arma::Mat const&, unsigned int, arma::Mat, arma::Mat, arma::Mat, arma::Mat, arma::Col const&, arma::Col const&, unsigned int, double, int, int, bool, unsigned int, double, int, unsigned int) /data/gannet/ripley/R/packages/tests-gcc-SAN/NNLM/src/nnmf.cpp:131 #8 0x7feba2e6f052 in _NNLM_c_nnmf /data/gannet/ripley/R/packages/tests-gcc-SAN/NNLM/src/RcppExports.cpp:51 #9 0x5781e9 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:683 #10 0x58094c in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1280 #11 0x61ced1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7054 #12 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #13 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #14 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #15 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #16 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #17 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #18 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #19 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #20 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #21 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #22 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #23 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #24 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #25 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #26 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #27 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #28 0x66a3d8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:811 #29 0x677d91 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2920 #30 0x66a8cc in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:763 #31 0x67ac56 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3295 #32 0x61ced1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7054 #33 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #34 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #35 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #36 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #37 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #38 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #39 0x66b09f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:711 #40 0x67c87c in do_withVisible /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3347 #41 0x714f9f in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1379 #42 0x62ccd1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7074 #43 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #44 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #45 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #46 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #47 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #48 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #49 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #50 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #51 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #52 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #53 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #54 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #55 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #56 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #57 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #58 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #59 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #60 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #61 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #62 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #63 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #64 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #65 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #66 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #67 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #68 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #69 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #70 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #71 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #72 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #73 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #74 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #75 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #76 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #77 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #78 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #79 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #80 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #81 0x66a3d8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:811 #82 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #83 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #84 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #85 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #86 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #87 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #88 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #89 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #90 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #91 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #92 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #93 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #94 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #95 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #96 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #97 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #98 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #99 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #100 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #101 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #102 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #103 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #104 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #105 0x71a8bb in dispatchMethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:436 #106 0x71b3b6 in Rf_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:476 #107 0x71bf13 in do_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:565 #108 0x62ccd1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7074 #109 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #110 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #111 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #112 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #113 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #114 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #115 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #116 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #117 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #118 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #119 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #120 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #121 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #122 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #123 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #124 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #125 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #126 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #127 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #128 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #129 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #130 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #131 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #132 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #133 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #134 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #135 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #136 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #137 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #138 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #139 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #140 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #141 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #142 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #143 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #144 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #145 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #146 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #147 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #148 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #149 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #150 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #151 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #152 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #153 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #154 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #155 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #156 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #157 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #158 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #159 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #160 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #161 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #162 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #163 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #164 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #165 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #166 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #167 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #168 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #169 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #170 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #171 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #172 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #173 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #174 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #175 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #176 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #177 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #178 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #179 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #180 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #181 0x66a3d8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:811 #182 0x6e846d in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #183 0x6e846d in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:200 #184 0x6e8b68 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #185 0x6e8cb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1113 #186 0x419388 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #187 0x7febb4c92f42 in __libc_start_main (/lib64/libc.so.6+0x23f42) #188 0x41bacd in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41bacd) **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| /data/gannet/ripley/R/test-4.0/RcppArmadillo/include/armadillo_bits/subview_meat.hpp:1223:54: runtime error: reference binding to null pointer of type 'const unsigned int' #0 0x7feba2f59623 in arma::subview::colptr(unsigned int) /data/gannet/ripley/R/test-4.0/RcppArmadillo/include/armadillo_bits/subview_meat.hpp:1223 #1 0x7feba2f59623 in arma::subview_col::subview_col(arma::Mat const&, unsigned int) /data/gannet/ripley/R/test-4.0/RcppArmadillo/include/armadillo_bits/subview_meat.hpp:3047 #2 0x7feba2f59623 in arma::Mat::col(unsigned int) const /data/gannet/ripley/R/test-4.0/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:2956 #3 0x7feba2f59623 in update_with_missing(arma::Mat&, arma::Mat const&, arma::Mat const&, arma::Mat const&, arma::Col const&, unsigned int, double, int, int) [clone ._omp_fn.0] /data/gannet/ripley/R/packages/tests-gcc-SAN/NNLM/src/update_with_missing.cpp:110 #4 0x7febb57d04b5 in GOMP_parallel (/lib64/libgomp.so.1+0x124b5) #5 0x7feba2f3d9e7 in update_with_missing(arma::Mat&, arma::Mat const&, arma::Mat const&, arma::Mat const&, arma::Col const&, unsigned int, double, int, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/NNLM/src/update_with_missing.cpp:73 #6 0x7feba2eef971 in c_nnmf(arma::Mat const&, unsigned int, arma::Mat, arma::Mat, arma::Mat, arma::Mat, arma::Col const&, arma::Col const&, unsigned int, double, int, int, bool, unsigned int, double, int, unsigned int) /data/gannet/ripley/R/packages/tests-gcc-SAN/NNLM/src/nnmf.cpp:117 #7 0x7feba2e6f052 in _NNLM_c_nnmf /data/gannet/ripley/R/packages/tests-gcc-SAN/NNLM/src/RcppExports.cpp:51 #8 0x5781e9 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:683 #9 0x58094c in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1280 #10 0x61ced1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7054 #11 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #12 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #13 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #14 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #15 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #16 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #17 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #18 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #19 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #20 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #21 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #22 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #23 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #24 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #25 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #26 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #27 0x66a3d8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:811 #28 0x677d91 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2920 #29 0x66a8cc in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:763 #30 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #31 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #32 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #33 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #34 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #35 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #36 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #37 0x66a3d8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:811 #38 0x67ac56 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3295 #39 0x61ced1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7054 #40 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #41 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #42 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #43 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #44 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #45 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #46 0x66b09f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:711 #47 0x67c87c in do_withVisible /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3347 #48 0x714f9f in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1379 #49 0x62ccd1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7074 #50 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #51 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #52 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #53 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #54 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #55 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #56 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #57 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #58 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #59 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #60 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #61 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #62 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #63 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #64 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #65 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #66 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #67 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #68 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #69 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #70 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #71 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #72 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #73 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #74 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #75 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #76 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #77 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #78 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #79 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #80 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #81 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #82 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #83 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #84 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #85 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #86 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #87 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #88 0x66a3d8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:811 #89 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #90 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #91 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #92 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #93 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #94 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #95 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #96 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #97 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #98 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #99 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #100 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #101 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #102 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #103 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #104 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #105 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #106 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #107 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #108 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #109 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #110 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #111 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #112 0x71a8bb in dispatchMethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:436 #113 0x71b3b6 in Rf_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:476 #114 0x71bf13 in do_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:565 #115 0x62ccd1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7074 #116 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #117 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #118 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #119 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #120 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #121 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #122 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #123 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #124 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #125 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #126 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #127 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #128 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #129 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #130 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #131 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #132 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #133 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #134 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #135 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #136 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #137 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #138 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #139 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #140 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #141 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #142 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #143 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #144 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #145 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #146 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #147 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #148 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #149 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #150 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #151 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #152 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #153 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #154 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #155 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #156 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #157 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #158 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #159 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #160 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #161 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #162 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #163 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #164 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #165 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #166 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #167 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #168 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #169 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #170 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #171 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #172 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #173 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #174 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #175 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #176 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #177 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #178 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #179 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #180 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #181 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #182 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #183 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #184 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #185 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #186 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #187 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #188 0x66a3d8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:811 #189 0x6e846d in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #190 0x6e846d in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:200 #191 0x6e8b68 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #192 0x6e8cb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1113 #193 0x419388 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #194 0x7febb4c92f42 in __libc_start_main (/lib64/libc.so.6+0x23f42) #195 0x41bacd in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41bacd) /data/gannet/ripley/R/test-4.0/RcppArmadillo/include/armadillo_bits/access.hpp:26:100: runtime error: reference binding to null pointer of type 'unsigned int' #0 0x7feba2f595d0 in unsigned int& arma::access::rw(unsigned int const&) /data/gannet/ripley/R/test-4.0/RcppArmadillo/include/armadillo_bits/access.hpp:26 #1 0x7feba2f595d0 in arma::subview::colptr(unsigned int) /data/gannet/ripley/R/test-4.0/RcppArmadillo/include/armadillo_bits/subview_meat.hpp:1223 #2 0x7feba2f595d0 in arma::subview_col::subview_col(arma::Mat const&, unsigned int) /data/gannet/ripley/R/test-4.0/RcppArmadillo/include/armadillo_bits/subview_meat.hpp:3047 #3 0x7feba2f595d0 in arma::Mat::col(unsigned int) const /data/gannet/ripley/R/test-4.0/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:2956 #4 0x7feba2f595d0 in update_with_missing(arma::Mat&, arma::Mat const&, arma::Mat const&, arma::Mat const&, arma::Col const&, unsigned int, double, int, int) [clone ._omp_fn.0] /data/gannet/ripley/R/packages/tests-gcc-SAN/NNLM/src/update_with_missing.cpp:110 #5 0x7febb57d04b5 in GOMP_parallel (/lib64/libgomp.so.1+0x124b5) #6 0x7feba2f3d9e7 in update_with_missing(arma::Mat&, arma::Mat const&, arma::Mat const&, arma::Mat const&, arma::Col const&, unsigned int, double, int, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/NNLM/src/update_with_missing.cpp:73 #7 0x7feba2eef971 in c_nnmf(arma::Mat const&, unsigned int, arma::Mat, arma::Mat, arma::Mat, arma::Mat, arma::Col const&, arma::Col const&, unsigned int, double, int, int, bool, unsigned int, double, int, unsigned int) /data/gannet/ripley/R/packages/tests-gcc-SAN/NNLM/src/nnmf.cpp:117 #8 0x7feba2e6f052 in _NNLM_c_nnmf /data/gannet/ripley/R/packages/tests-gcc-SAN/NNLM/src/RcppExports.cpp:51 #9 0x5781e9 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:683 #10 0x58094c in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1280 #11 0x61ced1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7054 #12 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #13 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #14 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #15 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #16 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #17 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #18 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #19 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #20 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #21 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #22 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #23 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #24 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #25 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #26 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #27 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #28 0x66a3d8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:811 #29 0x677d91 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2920 #30 0x66a8cc in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:763 #31 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #32 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #33 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #34 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #35 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #36 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #37 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #38 0x66a3d8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:811 #39 0x67ac56 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3295 #40 0x61ced1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7054 #41 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #42 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #43 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #44 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #45 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #46 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #47 0x66b09f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:711 #48 0x67c87c in do_withVisible /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3347 #49 0x714f9f in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1379 #50 0x62ccd1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7074 #51 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #52 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #53 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #54 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #55 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #56 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #57 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #58 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #59 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #60 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #61 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #62 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #63 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #64 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #65 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #66 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #67 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #68 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #69 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #70 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #71 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #72 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #73 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #74 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #75 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #76 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #77 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #78 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #79 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #80 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #81 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #82 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #83 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #84 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #85 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #86 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #87 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #88 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #89 0x66a3d8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:811 #90 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #91 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #92 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #93 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #94 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #95 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #96 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #97 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #98 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #99 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #100 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #101 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #102 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #103 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #104 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #105 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #106 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #107 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #108 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #109 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #110 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #111 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #112 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #113 0x71a8bb in dispatchMethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:436 #114 0x71b3b6 in Rf_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:476 #115 0x71bf13 in do_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:565 #116 0x62ccd1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7074 #117 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #118 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #119 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #120 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #121 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #122 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #123 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #124 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #125 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #126 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #127 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #128 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #129 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #130 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #131 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #132 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #133 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #134 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #135 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #136 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #137 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #138 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #139 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #140 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #141 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #142 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #143 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #144 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #145 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #146 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #147 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #148 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #149 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #150 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #151 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #152 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #153 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #154 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #155 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #156 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #157 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #158 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #159 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #160 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #161 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #162 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #163 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #164 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #165 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #166 0x66bda2 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #167 0x66c807 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5087 #168 0x66c807 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5128 #169 0x632ba8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6806 #170 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #171 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #172 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #173 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #174 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #175 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #176 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #177 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #178 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #179 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #180 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #181 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #182 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #183 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #184 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #185 0x63c551 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7022 #186 0x669f8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:688 #187 0x66f385 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1853 #188 0x671aa4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1779 #189 0x66a3d8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:811 #190 0x6e846d in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #191 0x6e846d in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:200 #192 0x6e8b68 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #193 0x6e8cb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1113 #194 0x419388 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #195 0x7febb4c92f42 in __libc_start_main (/lib64/libc.so.6+0x23f42) #196 0x41bacd in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41bacd) **************************************************| Loading required package: mice Loading required package: lattice Attaching package: 'mice' The following objects are masked from 'package:base': cbind, rbind Loading required package: missForest Loading required package: randomForest randomForest 4.6-14 Type rfNews() to see new features/changes/bug fixes. Loading required package: foreach Loading required package: itertools Loading required package: iterators 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| --- finished re-building ‘Fast-And-Versatile-NMF.Rmd’