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Type 'q()' to quit R. > library(testthat) > library(largeVis) Loading required package: Matrix largeVis was compiled without OpenMP support. > > test_check("largeVis") ================================================================= ==45606==ERROR: AddressSanitizer: container-overflow on address 0x61e0008d4880 at pc 0x7f8bc76a56c5 bp 0x7ffdb3e9dbb0 sp 0x7ffdb3e9dba8 WRITE of size 8 at 0x61e0008d4880 thread T0 #0 0x7f8bc76a56c4 in HDBSCAN::buildHierarchy(std::__1::vector, std::__1::allocator > > const&, unsigned int const&, unsigned long long const*) /usr/local/bin/../include/c++/v1/algorithm:2186:18 #1 0x7f8bc76abb4d in HDBSCAN::build(unsigned int const&, arma::SpMat const&, unsigned int const&, Rcpp::Matrix<13, Rcpp::PreserveStorage> const&) /data/gannet/ripley/R/packages/tests-clang-SAN/largeVis/src/hdbscanobj.cpp:148:2 #2 0x7f8bc769df7f in hdbscanc(arma::SpMat const&, Rcpp::Matrix<13, Rcpp::PreserveStorage> const&, int const&, int const&, Rcpp::Nullable >, bool) /data/gannet/ripley/R/packages/tests-clang-SAN/largeVis/src/hdbscan.cpp:18:30 #3 0x7f8bc7491775 in largeVis_hdbscanc /data/gannet/ripley/R/packages/tests-clang-SAN/largeVis/src/RcppExports.cpp:142:34 #4 0x7eb9f9 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:586:17 #5 0x85d93d in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1252:11 #6 0x9c84fa in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6772:14 #7 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #8 0xa265fe in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #9 0x9d7b68 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6740:12 #10 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #11 0xa265fe in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #12 0x9b3f74 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:747:12 #13 0xa355dc in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2778:8 #14 0x9b39ad in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:699:12 #15 0x7e54ee in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:573:17 #16 0x9cc4e3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7280:21 #17 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #18 0xa265fe in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #19 0x9d7b68 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6740:12 #20 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #21 0xa1f3aa in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:520:8 #22 0xa665d2 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:4971:15 #23 0xa66a1b in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5013:10 #24 0x9e054b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6504:20 #25 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #26 0xa1f3aa in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:520:8 #27 0x9b40c6 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:647:9 #28 0xa414a8 in do_withVisible /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3210:9 #29 0xb95169 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1370:11 #30 0x9c4e9c in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6792:15 #31 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #32 0xa265fe in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #33 0x9d7b68 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6740:12 #34 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #35 0xa1f3aa in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:520:8 #36 0xa665d2 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:4971:15 #37 0xa66a1b in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5013:10 #38 0x9e054b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6504:20 #39 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #40 0xa265fe in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #41 0x9d7b68 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6740:12 #42 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #43 0xa1f3aa in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:520:8 #44 0xa665d2 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:4971:15 #45 0xa66a1b in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5013:10 #46 0x9e054b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6504:20 #47 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #48 0xa1f3aa in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:520:8 #49 0xa665d2 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:4971:15 #50 0xa66a1b in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5013:10 #51 0x9e054b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6504:20 #52 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #53 0xa265fe in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #54 0x9d7b68 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6740:12 #55 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #56 0xa265fe in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #57 0x9d7b68 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6740:12 #58 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #59 0xa265fe in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #60 0x9d7b68 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6740:12 #61 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #62 0xa265fe in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #63 0x9d7b68 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6740:12 #64 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #65 0xa265fe in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #66 0x9b3f74 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:747:12 #67 0xa33afd in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2395:10 #68 0x9b39ad in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:699:12 #69 0xa3ef4c in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3157:13 #70 0x9c84fa in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6772:14 #71 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #72 0xa265fe in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #73 0x9d7b68 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6740:12 #74 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #75 0xa1f3aa in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:520:8 #76 0xa665d2 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:4971:15 #77 0xa66a1b in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5013:10 #78 0x9e054b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6504:20 #79 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #80 0xa265fe in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #81 0x9d7b68 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6740:12 #82 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #83 0xa1f3aa in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:520:8 #84 0xa665d2 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:4971:15 #85 0xa66a1b in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5013:10 #86 0x9e054b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6504:20 #87 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #88 0xa1f3aa in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:520:8 #89 0xa665d2 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:4971:15 #90 0xa66a1b in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5013:10 #91 0x9e054b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6504:20 #92 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #93 0xa1f3aa in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:520:8 #94 0xa665d2 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:4971:15 #95 0xa66a1b in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5013:10 #96 0x9e054b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6504:20 #97 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #98 0xa1f3aa in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:520:8 #99 0xa665d2 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:4971:15 #100 0xa66a1b in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5013:10 #101 0x9e054b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6504:20 #102 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #103 0xa1f3aa in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:520:8 #104 0xa665d2 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:4971:15 #105 0xa66a1b in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5013:10 #106 0x9e054b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6504:20 #107 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #108 0xa265fe in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #109 0x9d7b68 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6740:12 #110 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #111 0xa265fe in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #112 0x9d7b68 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6740:12 #113 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #114 0xa265fe in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #115 0x9d7b68 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6740:12 #116 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #117 0xa1f3aa in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:520:8 #118 0xa665d2 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:4971:15 #119 0xa66a1b in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5013:10 #120 0x9e054b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6504:20 #121 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #122 0xa1f3aa in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:520:8 #123 0xa665d2 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:4971:15 #124 0xa66a1b in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5013:10 #125 0x9e054b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6504:20 #126 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #127 0xa265fe in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #128 0x9d7b68 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6740:12 #129 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #130 0xa265fe in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #131 0x9d7b68 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6740:12 #132 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #133 0xa265fe in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #134 0x9d7b68 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6740:12 #135 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #136 0xa265fe in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #137 0x9d7b68 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6740:12 #138 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #139 0xa265fe in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #140 0x9d7b68 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6740:12 #141 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #142 0xa265fe in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #143 0x9b3f74 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:747:12 #144 0xa3f8c1 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3181:9 #145 0x9c84fa in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6772:14 #146 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #147 0xa265fe in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #148 0x9d7b68 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6740:12 #149 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #150 0xa1f3aa in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:520:8 #151 0xa665d2 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:4971:15 #152 0xa66a1b in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5013:10 #153 0x9e054b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6504:20 #154 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #155 0xa265fe in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #156 0x9d7b68 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6740:12 #157 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #158 0xa1f3aa in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:520:8 #159 0xa665d2 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:4971:15 #160 0xa66a1b in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5013:10 #161 0x9e054b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6504:20 #162 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #163 0xa1f3aa in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:520:8 #164 0xa665d2 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:4971:15 #165 0xa66a1b in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5013:10 #166 0x9e054b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6504:20 #167 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #168 0xa1f3aa in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:520:8 #169 0xa665d2 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:4971:15 #170 0xa66a1b in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5013:10 #171 0x9e054b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6504:20 #172 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #173 0xa1f3aa in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:520:8 #174 0xa665d2 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:4971:15 #175 0xa66a1b in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5013:10 #176 0x9e054b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6504:20 #177 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #178 0xa1f3aa in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:520:8 #179 0xa665d2 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:4971:15 #180 0xa66a1b in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5013:10 #181 0x9e054b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6504:20 #182 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #183 0xa265fe in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #184 0x9d7b68 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6740:12 #185 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #186 0xa265fe in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #187 0x9d7b68 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6740:12 #188 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #189 0xa265fe in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #190 0x9d7b68 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6740:12 #191 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #192 0xa1f3aa in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:520:8 #193 0xa665d2 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:4971:15 #194 0xa66a1b in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5013:10 #195 0x9e054b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6504:20 #196 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #197 0xa1f3aa in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:520:8 #198 0xa665d2 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:4971:15 #199 0xa66a1b in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5013:10 #200 0x9e054b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6504:20 #201 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #202 0xa265fe in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #203 0x9d7b68 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6740:12 #204 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #205 0xa265fe in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #206 0x9d7b68 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6740:12 #207 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #208 0xa265fe in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #209 0x9d7b68 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6740:12 #210 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #211 0xa265fe in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #212 0x9d7b68 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6740:12 #213 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #214 0xa265fe in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #215 0x9d7b68 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6740:12 #216 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #217 0xa265fe in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #218 0x9d7b68 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6740:12 #219 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #220 0xa1f3aa in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:520:8 #221 0xa665d2 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:4971:15 #222 0xa66a1b in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5013:10 #223 0x9e054b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6504:20 #224 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #225 0xa1f3aa in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:520:8 #226 0xa665d2 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:4971:15 #227 0xa66a1b in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5013:10 #228 0x9e054b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6504:20 #229 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #230 0xa265fe in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #231 0x9d7b68 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6740:12 #232 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #233 0xa265fe in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #234 0x9d7b68 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6740:12 #235 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #236 0xa265fe in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #237 0xa283d1 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1831:8 #238 0x588aa0 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:70:8 #239 0xb95169 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1370:11 #240 0x9c4e9c in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6792:15 #241 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #242 0xa265fe in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #243 0x9d7b68 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6740:12 #244 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #245 0xa1f3aa in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:520:8 #246 0xa665d2 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:4971:15 #247 0xa66a1b in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5013:10 #248 0x9e054b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6504:20 #249 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #250 0xa1f3aa in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:520:8 #251 0xa665d2 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:4971:15 0x61e0008d4880 is located 0 bytes inside of 2496-byte region [0x61e0008d4880,0x61e0008d5240) allocated by thread T0 here: #0 0x525d00 in operator new(unsigned long) /data/gannet/ripley/Sources/LLVM/6.0.x/trunk/projects/compiler-rt/lib/asan/asan_new_delete.cc:92 #1 0x7f8bc76b9fb3 in std::__1::__allocate(unsigned long) /usr/local/bin/../include/c++/v1/new:228:10 #2 0x7f8bc76b9fb3 in std::__1::allocator::allocate(unsigned long, void const*) /usr/local/bin/../include/c++/v1/memory:1793 #3 0x7f8bc76b9fb3 in std::__1::allocator_traits >::allocate(std::__1::allocator&, unsigned long) /usr/local/bin/../include/c++/v1/memory:1547 #4 0x7f8bc76b9fb3 in std::__1::__split_buffer&>::__split_buffer(unsigned long, unsigned long, std::__1::allocator&) /usr/local/bin/../include/c++/v1/__split_buffer:311 #5 0x7f8bc76af694 in std::__1::vector >::reserve(unsigned long) /usr/local/bin/../include/c++/v1/vector:1541:53 #6 0x7f8bc76a552a in HDBSCAN::buildHierarchy(std::__1::vector, std::__1::allocator > > const&, unsigned int const&, unsigned long long const*) /data/gannet/ripley/R/packages/tests-clang-SAN/largeVis/src/hdbscanobj.cpp:99:9 #7 0x7f8bc76abb4d in HDBSCAN::build(unsigned int const&, arma::SpMat const&, unsigned int const&, Rcpp::Matrix<13, Rcpp::PreserveStorage> const&) /data/gannet/ripley/R/packages/tests-clang-SAN/largeVis/src/hdbscanobj.cpp:148:2 #8 0x7f8bc769df7f in hdbscanc(arma::SpMat const&, Rcpp::Matrix<13, Rcpp::PreserveStorage> const&, int const&, int const&, Rcpp::Nullable >, bool) /data/gannet/ripley/R/packages/tests-clang-SAN/largeVis/src/hdbscan.cpp:18:30 #9 0x7f8bc7491775 in largeVis_hdbscanc /data/gannet/ripley/R/packages/tests-clang-SAN/largeVis/src/RcppExports.cpp:142:34 #10 0x7eb9f9 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:586:17 #11 0x85d93d in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1252:11 #12 0x9c84fa in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6772:14 #13 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #14 0xa265fe in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #15 0x9d7b68 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6740:12 #16 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #17 0xa265fe in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #18 0x9b3f74 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:747:12 #19 0xa355dc in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2778:8 #20 0x9b39ad in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:699:12 #21 0x7e54ee in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:573:17 #22 0x9cc4e3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7280:21 #23 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #24 0xa265fe in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #25 0x9d7b68 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6740:12 #26 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #27 0xa1f3aa in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:520:8 #28 0xa665d2 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:4971:15 #29 0xa66a1b in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5013:10 #30 0x9e054b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6504:20 #31 0x9b2d9d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:624:8 #32 0xa1f3aa in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:520:8 HINT: if you don't care about these errors you may set ASAN_OPTIONS=detect_container_overflow=0. If you suspect a false positive see also: https://github.com/google/sanitizers/wiki/AddressSanitizerContainerOverflow. SUMMARY: AddressSanitizer: container-overflow /usr/local/bin/../include/c++/v1/algorithm:2186:18 in HDBSCAN::buildHierarchy(std::__1::vector, std::__1::allocator > > const&, unsigned int const&, unsigned long long const*) Shadow bytes around the buggy address: 0x0c3c801128c0: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa 0x0c3c801128d0: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa 0x0c3c801128e0: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa 0x0c3c801128f0: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa 0x0c3c80112900: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa =>0x0c3c80112910:[fc]fc fc fc fc fc fc fc fc fc fc fc fc fc fc fc 0x0c3c80112920: fc fc fc fc fc fc fc fc fc fc fc fc fc fc fc fc 0x0c3c80112930: fc fc fc fc fc fc fc fc fc fc fc fc fc fc fc fc 0x0c3c80112940: fc fc fc fc fc fc fc fc fc fc fc fc fc fc fc fc 0x0c3c80112950: fc fc fc fc fc fc fc fc fc fc fc fc fc fc fc fc 0x0c3c80112960: fc fc fc fc fc fc fc fc fc fc fc fc fc fc fc fc Shadow byte legend (one shadow byte represents 8 application bytes): Addressable: 00 Partially addressable: 01 02 03 04 05 06 07 Heap left redzone: fa Freed heap region: fd Stack left redzone: f1 Stack mid redzone: f2 Stack right redzone: f3 Stack after return: f5 Stack use after scope: f8 Global redzone: f9 Global init order: f6 Poisoned by user: f7 Container overflow: fc Array cookie: ac Intra object redzone: bb ASan internal: fe Left alloca redzone: ca Right alloca redzone: cb ==45606==ABORTING