* installing *source* package ‘ravetools’ ... ** package ‘ravetools’ successfully unpacked and MD5 sums checked ** using staged installation R_HOME found: /data/gannet/ripley/R/gcc14 configure: Running under OSX... no checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for FFTW... yes configure: creating ./config.status config.status: creating src/Makevars ================================ compiler flags: -I../inst/include link argument: -lfftw3 ================================ ** libs using C++ compiler: ‘g++ (GCC) 14.0.1 20240204 (experimental)’ using C++17 make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-gcc14/ravetools/src' /usr/local/gcc14/bin/g++ -std=gnu++17 -I"/data/gannet/ripley/R/gcc14/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o /usr/local/gcc14/bin/g++ -std=gnu++17 -I"/data/gannet/ripley/R/gcc14/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c baseline.cpp -o baseline.o /usr/local/gcc14/bin/g++ -std=gnu++17 -I"/data/gannet/ripley/R/gcc14/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c bucketFill.cpp -o bucketFill.o /usr/local/gcc14/bin/g++ -std=gnu++17 -I"/data/gannet/ripley/R/gcc14/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c collapse-cplx.cpp -o collapse-cplx.o /usr/local/gcc14/bin/g++ -std=gnu++17 -I"/data/gannet/ripley/R/gcc14/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c collapse-real.cpp -o collapse-real.o /usr/local/gcc14/bin/g++ -std=gnu++17 -I"/data/gannet/ripley/R/gcc14/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c columnQuantile.cpp -o columnQuantile.o /usr/local/gcc14/bin/g++ -std=gnu++17 -I"/data/gannet/ripley/R/gcc14/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c fastColMeans.cpp -o fastColMeans.o /usr/local/gcc14/bin/g++ -std=gnu++17 -I"/data/gannet/ripley/R/gcc14/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c fastQuantile.cpp -o fastQuantile.o /usr/local/gcc14/bin/g++ -std=gnu++17 -I"/data/gannet/ripley/R/gcc14/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c fastcov.cpp -o fastcov.o /usr/local/gcc14/bin/g++ -std=gnu++17 -I"/data/gannet/ripley/R/gcc14/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c ffts.cpp -o ffts.o /usr/local/gcc14/bin/g++ -std=gnu++17 -I"/data/gannet/ripley/R/gcc14/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c fftw-wrapper.cpp -o fftw-wrapper.o /usr/local/gcc14/bin/g++ -std=gnu++17 -I"/data/gannet/ripley/R/gcc14/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c filter.cpp -o filter.o /usr/local/gcc14/bin/g++ -std=gnu++17 -I"/data/gannet/ripley/R/gcc14/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c glMatrix4.cpp -o glMatrix4.o /usr/local/gcc14/bin/g++ -std=gnu++17 -I"/data/gannet/ripley/R/gcc14/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c glQuaternion.cpp -o glQuaternion.o /usr/local/gcc14/bin/g++ -std=gnu++17 -I"/data/gannet/ripley/R/gcc14/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c glVector3.cpp -o glVector3.o glVector3.cpp: In member function 'rave3d::Vector3& rave3d::Vector3::fromArray(std::vector&, const int&, const int&)': glVector3.cpp:41:25: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 41 | if( n_ * 3 + offset > dlen ) { n_--; } | ~~~~~~~~~~~~~~~~^~~~~~ glVector3.cpp:46:37: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 46 | if( offset < 0 || n_ * 3 + offset > dlen ) { | ~~~~~~~~~~~~~~~~^~~~~~ glVector3.cpp: In member function 'SEXPREC* rave3d::Vector3::toArray(const int&, const int&)': glVector3.cpp:100:21: warning: comparison of integer expressions of different signedness: 'const int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 100 | } else if ( nSkip >= nElements ) { | ~~~~~~^~~~~~~~~~~~ glVector3.cpp:119:25: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 119 | for(size_t ii = 0; ii < retSize * 3; ii++, pinp++, pout++) { | ~~~^~~~~~~~~~~~~ /usr/local/gcc14/bin/g++ -std=gnu++17 -I"/data/gannet/ripley/R/gcc14/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c rawToSEXP.cpp -o rawToSEXP.o /usr/local/gcc14/bin/g++ -std=gnu++17 -I"/data/gannet/ripley/R/gcc14/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c shiftarray.cpp -o shiftarray.o /usr/local/gcc14/bin/g++ -std=gnu++17 -I"/data/gannet/ripley/R/gcc14/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c threads.cpp -o threads.o /usr/local/gcc14/bin/g++ -std=gnu++17 -I"/data/gannet/ripley/R/gcc14/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c utils.cpp -o utils.o /usr/local/gcc14/bin/g++ -std=gnu++17 -shared -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o ravetools.so RcppExports.o baseline.o bucketFill.o collapse-cplx.o collapse-real.o columnQuantile.o fastColMeans.o fastQuantile.o fastcov.o ffts.o fftw-wrapper.o filter.o glMatrix4.o glQuaternion.o glVector3.o rawToSEXP.o shiftarray.o threads.o utils.o -lfftw3 make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-gcc14/ravetools/src' installing to /data/gannet/ripley/R/packages/tests-gcc14/Libs/ravetools-lib/00LOCK-ravetools/00new/ravetools/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location Error: package or namespace load failed for ‘ravetools’ in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '/data/gannet/ripley/R/packages/tests-gcc14/Libs/ravetools-lib/00LOCK-ravetools/00new/ravetools/libs/ravetools.so': /data/gannet/ripley/R/packages/tests-gcc14/Libs/ravetools-lib/00LOCK-ravetools/00new/ravetools/libs/ravetools.so: undefined symbol: _Z21quickQuantileInternalIdEdRPT_S2_RlRKd Error: loading failed Execution halted ERROR: loading failed * removing ‘/data/gannet/ripley/R/packages/tests-gcc14/Libs/ravetools-lib/ravetools’ Command exited with non-zero status 1 Time 4:38.63, 252.21 + 18.59