* using log directory ‘/data/gannet/ripley/R/packages/tests-flang2/BFpack.Rcheck’
* using R Under development (unstable) (2023-07-22 r84729)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    clang version 17.0.0 (https://github.com/llvm/llvm-project.git b69d4a4fb707e1623a694d4a2c8fdfa1d8d69a06)
    flang-new version 17.0.0 (https://github.com/llvm/llvm-project.git b69d4a4fb707e1623a694d4a2c8fdfa1d8d69a06)
* running under: Fedora Linux 36 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘BFpack/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘BFpack’ version ‘1.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘BFpack’ can be installed ... [32s/83s] OK
* used C compiler: ‘clang version 17.0.0 (https://github.com/llvm/llvm-project.git 78d91df452d669570e120cb5c3d5febf7f17475d)’
* used Fortran compiler: ‘flang-new version 17.0.0 (https://github.com/llvm/llvm-project.git 78d91df452d669570e120cb5c3d5febf7f17475d)’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [4s/13s] OK
* checking whether the package can be loaded with stated dependencies ... [4s/11s] OK
* checking whether the package can be unloaded cleanly ... [4s/12s] OK
* checking whether the namespace can be loaded with stated dependencies ... [4s/10s] OK
* checking whether the namespace can be unloaded cleanly ... [4s/12s] OK
* checking loading without being on the library search path ... [4s/12s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [50s/136s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [7s/27s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [7m/22m]
 [7m/22m] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(BFpack)
  Loading required package: bain
  Registered S3 methods overwritten by 'BFpack':
    method               from
    get_estimates.lm     bain
    get_estimates.t_test bain
  > library(polycor)
  > 
  > test_check("BFpack")
  First, unconstrained icc analysis...
  
  Second, exploratory testing of icc's...
  groupNL11; groupHR11; 
  
  Third, confirmatory testing of icc's...
  groupNL11<groupHR11; 
  groupNL11=groupHR11; 
  First, unconstrained icc analysis...
  
  Second, exploratory testing of icc's...
  icc; 
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 68 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test_BFcortest.R:21:3'): BF.cor_test confirmatory hypotheses on correlations correctly evaluated ──
  BF2$BFmatrix_confirmatory not equivalent to `BFtable`.
  3/9 mismatches (average diff: 41.2)
  [4]   4.45 -   3.5 ==   0.95
  [7] 401.67 - 287.3 == 114.41
  [8]  90.36 -  82.2 ==   8.17
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 68 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... [3s/16s] OK
* checking PDF version of manual ... [8s/40s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/gannet/ripley/R/packages/tests-flang2/BFpack.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 33:04.24, 591.42 + 27.28