* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/nmm.Rcheck’
* using R Under development (unstable) (2022-07-10 r82573)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘nmm/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘nmm’ version ‘0.9’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘nmm’ can be installed ... [25s/25s] OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [42s/49s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [28s/42s] OK
* checking examples with --run-donttest ... [11s/12s] ERROR
Running examples in ‘nmm-Ex.R’ failed
The error most likely occurred in:

> ### Name: dataM
> ### Title: Example dataset
> ### Aliases: dataM
> ### Keywords: datasets
> 
> ### ** Examples
> 
> ## No test: 
> data(dataM)
> library(magrittr)
> library(dplyr)

Attaching package: ‘dplyr’

The following objects are masked from ‘package:data.table’:

    between, first, last

The following object is masked from ‘package:car’:

    recode

The following objects are masked from ‘package:stats’:

    filter, lag

The following objects are masked from ‘package:base’:

    intersect, setdiff, setequal, union

> if (requireNamespace("recipes", quietly = TRUE)&requireNamespace("Stat2Data", quietly = TRUE)) {
+ data("MathPlacement", package="Stat2Data")
+ head(MathPlacement)
+ library(recipes)
+ # As some of the data is missing, k-nearest neighbors (knn) imputation is 
+ # used to fill the gaps. This is done with recipes package and function 
+ # step_knnimpute.
+ dataM <- recipe(~ ., data = MathPlacement) %>%
+ step_knnimpute(everything()) %>% prep() %>% juice()
+ # Afterwards we create a categorical variable that will show whether a 
+ # student took a course which was too high, too low, the recommended one or
+ # something else happened:
+ dataM %<>% mutate(Student = 1:n(), DR_Course = case_when(
+ TooHigh == 1 ~ "chigh",
+ TooLow == 1 ~ "alow",
+ RecTaken == 1 ~ "bnormal",
+ TRUE ~"dother"
+ )) 
+ # We remove observations with ambiguous course status:
+ dataM %<>% filter(DR_Course!="dother")
+ dataM %>% select(DR_Course) %>% table %>% t 
+ }

Attaching package: ‘recipes’

The following object is masked from ‘package:Matrix’:

    update

The following object is masked from ‘package:stats’:

    step

Error: `step_knnimpute()` was deprecated in recipes 0.1.16 and is now defunct.
Please use `step_impute_knn()` instead.
Execution halted
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/nmm.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 4:21.20, 193.39 + 16.32