* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/mboxr.Rcheck’ * using R Under development (unstable) (2023-01-07 r83581) * using platform: x86_64-pc-linux-gnu (64-bit) * R was compiled by gcc (GCC) 11.3.1 20220421 (Red Hat 11.3.1-2) GNU Fortran (GCC) 11.3.1 20220421 (Red Hat 11.3.1-2) * running under: Fedora 34 (Workstation Edition) * using session charset: UTF-8 * checking for file ‘mboxr/DESCRIPTION’ ... OK * this is package ‘mboxr’ version ‘0.2.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘mboxr’ can be installed ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking LazyData ... NOTE 'LazyData' is specified without a 'data' directory * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking examples with --run-donttest ... ERROR Running examples in ‘mboxr-Ex.R’ failed The error most likely occurred in: > ### Name: merge_mbox_all > ### Title: Merging all mbox files in current directory into one tibble. > ### Aliases: merge_mbox_all > ### Keywords: merge_mbox_all > > ### ** Examples > > ## No test: > # Changing working directory to temp for the demonstration purpose only. > setwd(tempdir()) > library(mboxr) > test_path <- system.file("extdata", package = "mboxr") > # Save your own RDS file as an output if you need it: > data <- merge_mbox_all(path = test_path, file = "output.rds") Error in `map()`: ℹ In index: 1. Caused by error in `value[[3L]]()`: ! Need to install Anaconda from https://www.anaconda.com/download/. Backtrace: ▆ 1. ├─mboxr::merge_mbox_all(path = test_path, file = "output.rds") 2. │ └─list.files(path, pattern = "(*.mbox)$") %>% ... 3. ├─purrr::map_df(., ~mboxr::read_mbox(.)) 4. │ └─purrr::map(.x, .f, ...) 5. │ └─purrr:::map_("list", .x, .f, ..., .progress = .progress) 6. │ ├─purrr:::with_indexed_errors(...) 7. │ │ └─base::withCallingHandlers(...) 8. │ └─mboxr (local) .f(.x[[i]], ...) 9. │ └─mboxr::read_mbox(.) 10. │ └─base::tryCatch(...) 11. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 12. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 13. │ └─value[[3L]](cond) 14. │ └─base::stop("Need to install Anaconda from https://www.anaconda.com/download/.") 15. └─base::.handleSimpleError(...) 16. └─purrr (local) h(simpleError(msg, call)) 17. └─cli::cli_abort(c(i = "In index: {i}."), parent = cnd, call = error_call) 18. └─rlang::abort(...) Error in `map()`: ℹ In index: 1. Caused by error: ! Unable to find conda binary. Is Anaconda installed? Backtrace: ▆ 1. ├─mboxr::merge_mbox_all(path = test_path, file = "output.rds") 2. │ └─list.files(path, pattern = "(*.mbox)$") %>% ... 3. ├─purrr::map_df(., ~mboxr::read_mbox(.)) 4. │ └─purrr::map(.x, .f, ...) 5. │ └─purrr:::map_("list", .x, .f, ..., .progress = .progress) 6. │ ├─purrr:::with_indexed_errors(...) 7. │ │ └─base::withCallingHandlers(...) 8. │ └─mboxr (local) .f(.x[[i]], ...) 9. │ └─mboxr::read_mbox(.) 10. │ ├─base::tryCatch(...) 11. │ └─reticulate::use_condaenv(envnm, required = TRUE) 12. │ └─reticulate::conda_binary(conda) 13. │ └─base::stop(...) 14. └─base::.handleSimpleError(...) 15. └─purrr (local) h(simpleError(msg, call)) 16. └─cli::cli_abort(c(i = "In index: {i}."), parent = cnd, call = error_call) 17. └─rlang::abort(...) Execution halted * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * checking for new files in some other directories ... OK * DONE Status: 1 ERROR, 1 NOTE See ‘/data/blackswan/ripley/R/packages/tests-devel/mboxr.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 0:29.97, 23.94 + 5.41