* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/jjAnno.Rcheck’
* using R Under development (unstable) (2022-12-03 r83400)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘jjAnno/DESCRIPTION’ ... OK
* this is package ‘jjAnno’ version ‘0.0.3’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘jjAnno’ can be installed ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [11s/11s] ERROR
Running examples in ‘jjAnno-Ex.R’ failed
The error most likely occurred in:

> ### Name: annoRect
> ### Title: annoRect
> ### Aliases: annoRect
> 
> ### ** Examples
> 
> # ===============================
> # test function
> 
> # load data
> data(p)
> data(pgo)
> data(pdotfc)
> 
> # default plot
> annoRect(object = p,
+          annoPos = 'top',
+          xPosition = c(1:10))
[1] "This palatte have 20 colors!"
[1] "This palatte have 20 colors!"
[1] "This palatte have 20 colors!"
> 
> # you can set y axis no expand
> annoRect(object = p,
+          annoPos = 'top',
+          xPosition = c(1:10)) +
+   ggplot2::scale_y_discrete(expand = c(0,0))
[1] "This palatte have 20 colors!"
[1] "This palatte have 20 colors!"
[1] "This palatte have 20 colors!"
> 
> # adjust yPosition
> annoRect(object = p,
+          annoPos = 'top',
+          xPosition = c(1:10),
+          yPosition = c(11,11.5))
[1] "This palatte have 20 colors!"
[1] "This palatte have 20 colors!"
[1] "This palatte have 20 colors!"
> 
> # another example annotation GO terms
> annoRect(object = pgo,
+         annoPos = 'right',
+         yPosition = c(1:15),
+         pCol = rep('transparent',15),
+         pFill = rep(c('#F5F0BB','#C4DFAA','#90C8AC'),each = 5),
+         xPosition = c(3,9.5),
+         rectWidth = 1)
[1] "This palatte have 20 colors!"
Error in `new_mapped_discrete()`:
! `as.vector(x)` must be a vector with type <double>.
Instead, it has type <integer>.
Backtrace:
     ▆
  1. └─jjAnno::annoRect(...)
  2.   ├─base::print(object)
  3.   └─ggplot2:::print.ggplot(object)
  4.     ├─ggplot2::ggplot_build(x)
  5.     └─ggplot2:::ggplot_build.ggplot(x)
  6.       └─layout$map_position(data)
  7.         └─ggplot2 (local) map_position(..., self = self)
  8.           └─base::lapply(...)
  9.             └─ggplot2 (local) FUN(X[[i]], ...)
 10.               └─ggplot2:::scale_apply(layer_data, y_vars, "map", SCALE_Y, self$panel_scales_y)
 11.                 └─base::lapply(...)
 12.                   └─ggplot2 (local) FUN(X[[i]], ...)
 13.                     └─base::lapply(...)
 14.                       └─ggplot2 (local) FUN(X[[i]], ...)
 15.                         └─scales[[i]][[method]](data[[var]][scale_index[[i]]])
 16.                           └─ggplot2 (local) map(..., self = self)
 17.                             └─ggplot2:::new_mapped_discrete(x)
 18.                               └─vctrs::vec_assert(as.vector(x), double())
 19.                                 └─rlang::abort(...)
Execution halted
* checking examples with --run-donttest ... [19s/18s] ERROR
Running examples in ‘jjAnno-Ex.R’ failed
The error most likely occurred in:

> ### Name: annoRect
> ### Title: annoRect
> ### Aliases: annoRect
> 
> ### ** Examples
> 
> # ===============================
> # test function
> 
> # load data
> data(p)
> data(pgo)
> data(pdotfc)
> 
> # default plot
> annoRect(object = p,
+          annoPos = 'top',
+          xPosition = c(1:10))
[1] "This palatte have 20 colors!"
[1] "This palatte have 20 colors!"
[1] "This palatte have 20 colors!"
> 
> # you can set y axis no expand
> annoRect(object = p,
+          annoPos = 'top',
+          xPosition = c(1:10)) +
+   ggplot2::scale_y_discrete(expand = c(0,0))
[1] "This palatte have 20 colors!"
[1] "This palatte have 20 colors!"
[1] "This palatte have 20 colors!"
> 
> # adjust yPosition
> annoRect(object = p,
+          annoPos = 'top',
+          xPosition = c(1:10),
+          yPosition = c(11,11.5))
[1] "This palatte have 20 colors!"
[1] "This palatte have 20 colors!"
[1] "This palatte have 20 colors!"
> 
> # another example annotation GO terms
> annoRect(object = pgo,
+         annoPos = 'right',
+         yPosition = c(1:15),
+         pCol = rep('transparent',15),
+         pFill = rep(c('#F5F0BB','#C4DFAA','#90C8AC'),each = 5),
+         xPosition = c(3,9.5),
+         rectWidth = 1)
[1] "This palatte have 20 colors!"
Error in `new_mapped_discrete()`:
! `as.vector(x)` must be a vector with type <double>.
Instead, it has type <integer>.
Backtrace:
     ▆
  1. └─jjAnno::annoRect(...)
  2.   ├─base::print(object)
  3.   └─ggplot2:::print.ggplot(object)
  4.     ├─ggplot2::ggplot_build(x)
  5.     └─ggplot2:::ggplot_build.ggplot(x)
  6.       └─layout$map_position(data)
  7.         └─ggplot2 (local) map_position(..., self = self)
  8.           └─base::lapply(...)
  9.             └─ggplot2 (local) FUN(X[[i]], ...)
 10.               └─ggplot2:::scale_apply(layer_data, y_vars, "map", SCALE_Y, self$panel_scales_y)
 11.                 └─base::lapply(...)
 12.                   └─ggplot2 (local) FUN(X[[i]], ...)
 13.                     └─base::lapply(...)
 14.                       └─ggplot2 (local) FUN(X[[i]], ...)
 15.                         └─scales[[i]][[method]](data[[var]][scale_index[[i]]])
 16.                           └─ggplot2 (local) map(..., self = self)
 17.                             └─ggplot2:::new_mapped_discrete(x)
 18.                               └─vctrs::vec_assert(as.vector(x), double())
 19.                                 └─rlang::abort(...)
Execution halted
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 2 ERRORs
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/jjAnno.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 1:02.79, 56.25 + 6.18