* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/RcppEigenAD.Rcheck’
* using R Under development (unstable) (2023-08-12 r84939)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 13.2.1 20230728 (Red Hat 13.2.1-1)
    GNU Fortran (GCC) 13.2.1 20230728 (Red Hat 13.2.1-1)
* running under: Fedora Linux 38 (Workstation Edition)
* using session charset: UTF-8
* checking for file ‘RcppEigenAD/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RcppEigenAD’ version ‘1.0.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RcppEigenAD’ can be installed ... [31s/31s] OK
* used C++ compiler: ‘g++ (GCC) 13.2.1 20230728 (Red Hat 13.2.1-1)’
* checking C++ specification ... NOTE
  Specified C++11: please drop specification unless essential
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking startup messages can be suppressed ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘RcppEigen’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking examples ... OK
* checking examples with --run-donttest ... [51s/52s] ERROR
Running examples in ‘RcppEigenAD-Ex.R’ failed
The error most likely occurred in:

> ### Name: H
> ### Title: Construct a function to calculate the Hessian of a function.
> ### Aliases: H
> 
> ### ** Examples
> 
> ## No test: 
> library(RcppEigenAD)
> # define f as the eigen vectors of its argument x
> # calculated using the Eigen library
> f<-sourceCppAD('
+ ADmat f(const ADmat& X)
+ {
+    Eigen::EigenSolver<ADmat> es(X);
+    return es.pseudoEigenvectors();
+ }
+ ')
using C++ compiler: ‘g++ (GCC) 13.2.1 20230728 (Red Hat 13.2.1-1)’
make[1]: Entering directory '/tmp/RtmplHWOtW/working_dir/RtmpQPaEf3/sourceCpp-x86_64-pc-linux-gnu-1.0.11/sourcecpp_2f32602ec94cff'
g++ -std=gnu++17 -I"/data/blackswan/ripley/R/R-devel/include" -DNDEBUG   -I"/data/blackswan/ripley/R/R-devel/site-library/Rcpp/include" -I"/data/blackswan/ripley/R/R-devel/site-library/RcppEigen/include" -I"/data/blackswan/ripley/R/packages/tests-devel/RcppEigenAD.Rcheck/RcppEigenAD/include" -I"/data/blackswan/ripley/R/R-devel/site-library/BH/include" -I"/tmp/RtmplHWOtW/working_dir/RtmpQPaEf3/sourceCpp-x86_64-pc-linux-gnu-1.0.11" -I/data/blackswan/ripley/extras/include -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -c file2f326055461aa9.cpp -o file2f326055461aa9.o
In file included from /data/blackswan/ripley/R/R-devel/site-library/BH/include/boost/bind/mem_fn.hpp:25,
                 from /data/blackswan/ripley/R/R-devel/site-library/BH/include/boost/mem_fn.hpp:22,
                 from /data/blackswan/ripley/R/R-devel/site-library/BH/include/boost/function/detail/prologue.hpp:18,
                 from /data/blackswan/ripley/R/R-devel/site-library/BH/include/boost/function.hpp:30,
                 from /data/blackswan/ripley/R/packages/tests-devel/RcppEigenAD.Rcheck/RcppEigenAD/include/cppad.eigen.h:8,
                 from /data/blackswan/ripley/R/packages/tests-devel/RcppEigenAD.Rcheck/RcppEigenAD/include/adfunc.h:6,
                 from file2f326055461aa9.cpp:9:
/data/blackswan/ripley/R/R-devel/site-library/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   48 | template<class T> T * get_pointer(std::auto_ptr<T> const& p)
      |                                        ^~~~~~~~
In file included from /usr/include/c++/13/memory:78,
                 from /data/blackswan/ripley/R/packages/tests-devel/RcppEigenAD.Rcheck/RcppEigenAD/include/cppad/utility/thread_alloc.hpp:17,
                 from /data/blackswan/ripley/R/packages/tests-devel/RcppEigenAD.Rcheck/RcppEigenAD/include/cppad/core/base_complex.hpp:18,
                 from /data/blackswan/ripley/R/packages/tests-devel/RcppEigenAD.Rcheck/RcppEigenAD/include/cppad/base_require.hpp:180,
                 from /data/blackswan/ripley/R/packages/tests-devel/RcppEigenAD.Rcheck/RcppEigenAD/include/cppad/cppad.hpp:22,
                 from /data/blackswan/ripley/R/packages/tests-devel/RcppEigenAD.Rcheck/RcppEigenAD/include/cppad/example/cppad_eigen.hpp:74,
                 from /data/blackswan/ripley/R/packages/tests-devel/RcppEigenAD.Rcheck/RcppEigenAD/include/cppad.eigen.h:6:
/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here
   65 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /data/blackswan/ripley/R/R-devel/site-library/BH/include/boost/bind.hpp:30,
                 from /data/blackswan/ripley/R/packages/tests-devel/RcppEigenAD.Rcheck/RcppEigenAD/include/cppad.eigen.h:9:
/data/blackswan/ripley/R/R-devel/site-library/BH/include/boost/config/pragma_message.hpp:24:34: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   24 | # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x)))
      |                                  ^~~~~~~
/data/blackswan/ripley/R/R-devel/site-library/BH/include/boost/bind.hpp:36:1: note: in expansion of macro ‘BOOST_PRAGMA_MESSAGE’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/data/blackswan/ripley/R/packages/tests-devel/RcppEigenAD.Rcheck/RcppEigenAD/include/adfunc.h: In instantiation of ‘boost::tuples::tuple<std::vector<Eigen::Matrix<LhsScalar, -1, -1, 0> >, Eigen::Matrix<LhsScalar, -1, -1, 0>, Eigen::Array<Eigen::Matrix<LhsScalar, -1, -1, 0>, -1, -1> > adfunc(const boost::function<std::vector<Eigen::Matrix<Scalar, -1, -1> >(const std::vector<Eigen::Matrix<Scalar, -1, -1> >&)>&, const std::vector<Eigen::Matrix<LhsScalar, -1, -1, 0> >&) [with T1 = double; T2 = CppAD::AD<double>]’:
file2f326055461aa9.cpp:38:30:   required from here
/data/blackswan/ripley/R/packages/tests-devel/RcppEigenAD.Rcheck/RcppEigenAD/include/adfunc.h:44:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
   44 |       for(int row = 0; row < x_nrows; row++)
      |                        ~~~~^~~~~~~~~
/data/blackswan/ripley/R/packages/tests-devel/RcppEigenAD.Rcheck/RcppEigenAD/include/adfunc.h:46:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
   46 |           for(int col = 0; col < x_ncols; col++)
      |                            ~~~~^~~~~~~~~
/data/blackswan/ripley/R/packages/tests-devel/RcppEigenAD.Rcheck/RcppEigenAD/include/adfunc.h:67:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
   67 |       for(int row = 0; row < x_nrows; row++)
      |                        ~~~~^~~~~~~~~
/data/blackswan/ripley/R/packages/tests-devel/RcppEigenAD.Rcheck/RcppEigenAD/include/adfunc.h:69:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
   69 |           for(int col = 0; col < x_ncols; col++)
      |                            ~~~~^~~~~~~~~
/data/blackswan/ripley/R/packages/tests-devel/RcppEigenAD.Rcheck/RcppEigenAD/include/adfunc.h:102:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
  102 |       for(int row = 0; row < y_nrows; row++)
      |                        ~~~~^~~~~~~~~
/data/blackswan/ripley/R/packages/tests-devel/RcppEigenAD.Rcheck/RcppEigenAD/include/adfunc.h:104:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
  104 |           for(int col = 0; col < y_ncols; col++)
      |                            ~~~~^~~~~~~~~
/data/blackswan/ripley/R/packages/tests-devel/RcppEigenAD.Rcheck/RcppEigenAD/include/adfunc.h:123:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
  123 |   for(int row = 0; row < a_ys_AD_vec_size; row++)
      |                    ~~~~^~~~~~~~~~~~~~~~~~
/data/blackswan/ripley/R/packages/tests-devel/RcppEigenAD.Rcheck/RcppEigenAD/include/adfunc.h:125:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
  125 |       for(int col = 0; col < xs_AD_vec_size; col++)
      |                        ~~~~^~~~~~~~~~~~~~~~
/data/blackswan/ripley/R/packages/tests-devel/RcppEigenAD.Rcheck/RcppEigenAD/include/adfunc.h:133:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
  133 |   for(int d = 0; d < a_ys_AD_vec_size; d++)
      |                  ~~^~~~~~~~~~~~~~~~~~
/data/blackswan/ripley/R/packages/tests-devel/RcppEigenAD.Rcheck/RcppEigenAD/include/adfunc.h:138:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
  138 |       for(int row = 0; row < xs_AD_vec_size; row++)
      |                        ~~~~^~~~~~~~~~~~~~~~
/data/blackswan/ripley/R/packages/tests-devel/RcppEigenAD.Rcheck/RcppEigenAD/include/adfunc.h:140:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
  140 |           for(int col = 0; col < xs_AD_vec_size; col++)
      |                            ~~~~^~~~~~~~~~~~~~~~
/data/blackswan/ripley/R/packages/tests-devel/RcppEigenAD.Rcheck/RcppEigenAD/include/adfunc.h:82:16: warning: unused variable ‘num_a_ys’ [-Wunused-variable]
   82 |   unsigned int num_a_ys = a_ys.size();
      |                ^~~~~~~~
In file included from /data/blackswan/ripley/R/R-devel/site-library/RcppEigen/include/Eigen/Core:374,
                 from /data/blackswan/ripley/R/R-devel/site-library/RcppEigen/include/Eigen/Dense:1,
                 from /data/blackswan/ripley/R/R-devel/site-library/RcppEigen/include/RcppEigenForward.h:30,
                 from /data/blackswan/ripley/R/R-devel/site-library/RcppEigen/include/RcppEigen.h:25,
                 from file2f326055461aa9.cpp:7:
/data/blackswan/ripley/R/R-devel/site-library/RcppEigen/include/Eigen/src/Core/MathFunctions.h: In instantiation of ‘typename Eigen::internal::enable_if<((! std::is_integral<_Tp>::value) && (! Eigen::NumTraits<T>::IsComplex)), bool>::type Eigen::internal::isfinite_impl(const T&) [with T = CppAD::AD<double>; typename enable_if<((! std::is_integral<_Tp>::value) && (! Eigen::NumTraits<T>::IsComplex)), bool>::type = bool]’:
/data/blackswan/ripley/R/R-devel/site-library/RcppEigen/include/Eigen/src/Core/MathFunctions.h:963:100:   required from ‘bool Eigen::numext::isfinite(const T&) [with T = CppAD::AD<double>]’
/data/blackswan/ripley/R/R-devel/site-library/RcppEigen/include/Eigen/src/Core/MathFunctions.h:1274:28:   required from ‘bool Eigen::internal::isfinite_impl(const std::complex<_Tp>&) [with T = CppAD::AD<double>]’
/data/blackswan/ripley/R/R-devel/site-library/RcppEigen/include/Eigen/src/Core/MathFunctions.h:963:100:   required from ‘bool Eigen::numext::isfinite(const T&) [with T = std::complex<CppAD::AD<double> >]’
/data/blackswan/ripley/R/R-devel/site-library/RcppEigen/include/Eigen/src/Eigenvalues/EigenSolver.h:407:23:   required from ‘Eigen::EigenSolver<MatrixType>& Eigen::EigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, bool) [with InputType = Eigen::Matrix<CppAD::AD<double>, -1, -1>; _MatrixType = Eigen::Matrix<CppAD::AD<double>, -1, -1>]’
/data/blackswan/ripley/R/R-devel/site-library/RcppEigen/include/Eigen/src/Eigenvalues/EigenSolver.h:156:14:   required from ‘Eigen::EigenSolver<_MatrixType>::EigenSolver(const Eigen::EigenBase<OtherDerived>&, bool) [with InputType = Eigen::Matrix<CppAD::AD<double>, -1, -1>; _MatrixType = Eigen::Matrix<CppAD::AD<double>, -1, -1>]’
file2f326055461aa9.cpp:18:34:   required from here
/data/blackswan/ripley/R/R-devel/site-library/RcppEigen/include/Eigen/src/Core/MathFunctions.h:723:39: error: no matching function for call to ‘isfinite(const CppAD::AD<double>&)’
  723 |     return isfinite EIGEN_NOT_A_MACRO (x);
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
In file included from /data/blackswan/ripley/R/R-devel/site-library/Rcpp/include/Rcpp/platform/compiler.h:100,
                 from /data/blackswan/ripley/R/R-devel/site-library/Rcpp/include/Rcpp/r/headers.h:62,
                 from /data/blackswan/ripley/R/R-devel/site-library/Rcpp/include/RcppCommon.h:30,
                 from /data/blackswan/ripley/R/R-devel/site-library/Rcpp/include/Rcpp.h:27,
                 from file2f326055461aa9.cpp:6:
/usr/include/c++/13/cmath:1138:5: note: candidate: ‘template<class _Tp> constexpr typename __gnu_cxx::__enable_if<std::__is_integer<_Tp>::__value, bool>::__type std::isfinite(_Tp)’
 1138 |     isfinite(_Tp __x)
      |     ^~~~~~~~
/usr/include/c++/13/cmath:1138:5: note:   template argument deduction/substitution failed:
/usr/include/c++/13/cmath: In substitution of ‘template<class _Tp> constexpr typename __gnu_cxx::__enable_if<std::__is_integer<_Tp>::__value, bool>::__type std::isfinite(_Tp) [with _Tp = CppAD::AD<double>]’:
/data/blackswan/ripley/R/R-devel/site-library/RcppEigen/include/Eigen/src/Core/MathFunctions.h:723:39:   required from ‘typename Eigen::internal::enable_if<((! std::is_integral<_Tp>::value) && (! Eigen::NumTraits<T>::IsComplex)), bool>::type Eigen::internal::isfinite_impl(const T&) [with T = CppAD::AD<double>; typename enable_if<((! std::is_integral<_Tp>::value) && (! Eigen::NumTraits<T>::IsComplex)), bool>::type = bool]’
/data/blackswan/ripley/R/R-devel/site-library/RcppEigen/include/Eigen/src/Core/MathFunctions.h:963:100:   required from ‘bool Eigen::numext::isfinite(const T&) [with T = CppAD::AD<double>]’
/data/blackswan/ripley/R/R-devel/site-library/RcppEigen/include/Eigen/src/Core/MathFunctions.h:1274:28:   required from ‘bool Eigen::internal::isfinite_impl(const std::complex<_Tp>&) [with T = CppAD::AD<double>]’
/data/blackswan/ripley/R/R-devel/site-library/RcppEigen/include/Eigen/src/Core/MathFunctions.h:963:100:   required from ‘bool Eigen::numext::isfinite(const T&) [with T = std::complex<CppAD::AD<double> >]’
/data/blackswan/ripley/R/R-devel/site-library/RcppEigen/include/Eigen/src/Eigenvalues/EigenSolver.h:407:23:   required from ‘Eigen::EigenSolver<MatrixType>& Eigen::EigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, bool) [with InputType = Eigen::Matrix<CppAD::AD<double>, -1, -1>; _MatrixType = Eigen::Matrix<CppAD::AD<double>, -1, -1>]’
/data/blackswan/ripley/R/R-devel/site-library/RcppEigen/include/Eigen/src/Eigenvalues/EigenSolver.h:156:14:   required from ‘Eigen::EigenSolver<_MatrixType>::EigenSolver(const Eigen::EigenBase<OtherDerived>&, bool) [with InputType = Eigen::Matrix<CppAD::AD<double>, -1, -1>; _MatrixType = Eigen::Matrix<CppAD::AD<double>, -1, -1>]’
file2f326055461aa9.cpp:18:34:   required from here
/usr/include/c++/13/cmath:1138:5: error: no type named ‘__type’ in ‘struct __gnu_cxx::__enable_if<false, bool>’
/data/blackswan/ripley/R/R-devel/site-library/RcppEigen/include/Eigen/src/Core/MathFunctions.h: In instantiation of ‘typename Eigen::internal::enable_if<((! std::is_integral<_Tp>::value) && (! Eigen::NumTraits<T>::IsComplex)), bool>::type Eigen::internal::isfinite_impl(const T&) [with T = CppAD::AD<double>; typename enable_if<((! std::is_integral<_Tp>::value) && (! Eigen::NumTraits<T>::IsComplex)), bool>::type = bool]’:
/data/blackswan/ripley/R/R-devel/site-library/RcppEigen/include/Eigen/src/Core/MathFunctions.h:963:100:   required from ‘bool Eigen::numext::isfinite(const T&) [with T = CppAD::AD<double>]’
/data/blackswan/ripley/R/R-devel/site-library/RcppEigen/include/Eigen/src/Core/MathFunctions.h:1274:28:   required from ‘bool Eigen::internal::isfinite_impl(const std::complex<_Tp>&) [with T = CppAD::AD<double>]’
/data/blackswan/ripley/R/R-devel/site-library/RcppEigen/include/Eigen/src/Core/MathFunctions.h:963:100:   required from ‘bool Eigen::numext::isfinite(const T&) [with T = std::complex<CppAD::AD<double> >]’
/data/blackswan/ripley/R/R-devel/site-library/RcppEigen/include/Eigen/src/Eigenvalues/EigenSolver.h:407:23:   required from ‘Eigen::EigenSolver<MatrixType>& Eigen::EigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, bool) [with InputType = Eigen::Matrix<CppAD::AD<double>, -1, -1>; _MatrixType = Eigen::Matrix<CppAD::AD<double>, -1, -1>]’
/data/blackswan/ripley/R/R-devel/site-library/RcppEigen/include/Eigen/src/Eigenvalues/EigenSolver.h:156:14:   required from ‘Eigen::EigenSolver<_MatrixType>::EigenSolver(const Eigen::EigenBase<OtherDerived>&, bool) [with InputType = Eigen::Matrix<CppAD::AD<double>, -1, -1>; _MatrixType = Eigen::Matrix<CppAD::AD<double>, -1, -1>]’
file2f326055461aa9.cpp:18:34:   required from here
/usr/include/c++/13/cmath:1130:3: note: candidate: ‘constexpr bool std::isfinite(long double)’
 1130 |   isfinite(long double __x)
      |   ^~~~~~~~
/usr/include/c++/13/cmath:1130:24: note:   no known conversion for argument 1 from ‘const CppAD::AD<double>’ to ‘long double’
 1130 |   isfinite(long double __x)
      |            ~~~~~~~~~~~~^~~
/usr/include/c++/13/cmath:1126:3: note: candidate: ‘constexpr bool std::isfinite(double)’
 1126 |   isfinite(double __x)
      |   ^~~~~~~~
/usr/include/c++/13/cmath:1126:19: note:   no known conversion for argument 1 from ‘const CppAD::AD<double>’ to ‘double’
 1126 |   isfinite(double __x)
      |            ~~~~~~~^~~
/usr/include/c++/13/cmath:1122:3: note: candidate: ‘constexpr bool std::isfinite(float)’
 1122 |   isfinite(float __x)
      |   ^~~~~~~~
/usr/include/c++/13/cmath:1122:18: note:   no known conversion for argument 1 from ‘const CppAD::AD<double>’ to ‘float’
 1122 |   isfinite(float __x)
      |            ~~~~~~^~~
make[1]: *** [/data/blackswan/ripley/R/R-devel/etc/Makeconf:198: file2f326055461aa9.o] Error 1
make[1]: Target 'all' not remade because of errors.
make[1]: Leaving directory '/tmp/RtmplHWOtW/working_dir/RtmpQPaEf3/sourceCpp-x86_64-pc-linux-gnu-1.0.11/sourcecpp_2f32602ec94cff'
Error in sourceCpp(code = adlacode) : 
  Error 1 occurred building shared library.
Calls: sourceCppAD -> sourceCpp
Execution halted
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 1 ERROR, 2 NOTEs
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/RcppEigenAD.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 2:07.84, 113.89 + 12.93