* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/GapAnalysis.Rcheck’ * using R Under development (unstable) (2023-05-24 r84463) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 11.3.1 20220421 (Red Hat 11.3.1-2) GNU Fortran (GCC) 11.3.1 20220421 (Red Hat 11.3.1-2) * running under: Fedora 34 (Workstation Edition) * using session charset: UTF-8 * checking for file ‘GapAnalysis/DESCRIPTION’ ... OK * this is package ‘GapAnalysis’ version ‘1.0.2’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘GapAnalysis’ can be installed ... [24s/25s] OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [32s/33s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... NOTE Note: found 2 marked UTF-8 strings * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [19s/19s] OK * checking examples with --run-donttest ... [16s/37s] ERROR Running examples in ‘GapAnalysis-Ex.R’ failed The error most likely occurred in: > ### Name: GetDatasets > ### Title: Preparing datasets to run GapAnalysis functions > ### Aliases: GetDatasets > > ### ** Examples > > ## No test: > GetDatasets() trying URL 'https://dataverse.harvard.edu/api/access/datafile/4288685?gbrecs=true' Content type 'application/octet-stream' length 19871 bytes (19 KB) ================================================== downloaded 19 KB trying URL 'https://dataverse.harvard.edu/api/access/datafile/3678105?gbrecs=true' Content type 'application/msword' length 88064 bytes (86 KB) ================================================== downloaded 86 KB trying URL 'https://dataverse.harvard.edu/api/access/datafile/3678101?gbrecs=true' Content type 'text/plain' length 151 bytes ================================================== downloaded 151 bytes trying URL 'https://dataverse.harvard.edu/api/access/datafile/3678100?gbrecs=true' Content type 'application/octet-stream' length 17408 bytes (17 KB) ================================================== downloaded 17 KB trying URL 'https://dataverse.harvard.edu/api/access/datafile/3678109?gbrecs=true' Content type 'application/dbf' length 632210 bytes (617 KB) ================================================== downloaded 617 KB trying URL 'https://dataverse.harvard.edu/api/access/datafile/3678111?gbrecs=true' Content type 'application/octet-stream' length 11776 bytes (11 KB) ================================================== downloaded 11 KB trying URL 'https://dataverse.harvard.edu/api/access/datafile/3678110?gbrecs=true' Content type 'application/prj' length 145 bytes ================================================== downloaded 145 bytes trying URL 'https://dataverse.harvard.edu/api/access/datafile/3678103?gbrecs=true' Content type 'application/sbn' length 8156 bytes ================================================== downloaded 8156 bytes trying URL 'https://dataverse.harvard.edu/api/access/datafile/3678107?gbrecs=true' Content type 'application/sbx' length 724 bytes ================================================== downloaded 724 bytes trying URL 'https://dataverse.harvard.edu/api/access/datafile/3678104?gbrecs=true' Content type 'application/shp' length 66389844 bytes (63.3 MB) ================================================== downloaded 63.3 MB trying URL 'https://dataverse.harvard.edu/api/access/datafile/3678108?gbrecs=true' Content type 'text/xml' length 78447 bytes (76 KB) ================================================== downloaded 76 KB trying URL 'https://dataverse.harvard.edu/api/access/datafile/3678106?gbrecs=true' Content type 'application/shx' length 6612 bytes ================================================== downloaded 6612 bytes trying URL 'https://dataverse.harvard.edu/api/access/datafile/3678102?gbrecs=true' Content type 'image/tiff' length 3356668 bytes (3.2 MB) ================================================== downloaded 3.2 MB trying URL 'https://dataverse.harvard.edu/api/access/datafile/3797034?gbrecs=true' Warning in utils::download.file(paste0(dataverse_path, 3797034, "?gbrecs=true"), : cannot open URL 'https://dataverse.harvard.edu/api/access/datafile/3797034?gbrecs=true': HTTP status was '503 Service Unavailable' Error in utils::download.file(paste0(dataverse_path, 3797034, "?gbrecs=true"), : cannot open URL 'https://dataverse.harvard.edu/api/access/datafile/3797034?gbrecs=true' Calls: GetDatasets -> Execution halted * checking PDF version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * checking for new files in some other directories ... OK * DONE Status: 1 ERROR, 1 NOTE See ‘/data/blackswan/ripley/R/packages/tests-devel/GapAnalysis.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 4:05.27, 207.30 + 10.74