* using log directory ‘/data/gannet/ripley/R/packages/tests-clang/RxODE.Rcheck’
* using R Under development (unstable) (2022-10-05 r83030)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘RxODE/DESCRIPTION’ ... OK
* this is package ‘RxODE’ version ‘1.1.5’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RxODE’ can be installed ... [692s/176s] WARNING
Found the following significant warnings:
  ./lsoda.h:43:42: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./lsoda.h:44:38: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./../inst/include/RxODE.h:49:30: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  30: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./../inst/include/RxODE.h:299:33: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./../inst/include/RxODE.h:301:30: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./../inst/include/RxODE.h:303:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./../inst/include/RxODE.h:304:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./../inst/include/RxODE.h:312:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  33: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./../inst/include/RxODE.h./../inst/include/RxODE.h::301299::3033::  warning: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ::  warning: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./../inst/include/RxODE.h./../inst/include/RxODE.h::301304::3023::./../inst/include/RxODE.h  :warning: warning: 304a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]:
  23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]typedef void *(*t_assignFuns)();rx_solve *getRxSolve2_();
  18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./../inst/include/RxODE.h./../inst/include/RxODE.h./../inst/include/RxODE.h:::312304312:::182318:::   warning: warning: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./tran.h:7:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./tran.h:287:11: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  call_dvode.c:21:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  call_dvode.c:24:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  call_dvode.c:34:39: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./tran.h./../inst/include/RxODE.h::287304::1123::  warning: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]call_dvode.c
  ./../inst/include/RxODE.h:304:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]In file included from 
  ./genModelVars.h:57:35: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  11: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./genModelVars.h:92:30: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:18:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:44:13: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:47:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:51:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:52:41: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:54:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:104:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:129:39: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:137:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:163:29: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:166:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:221:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:223:35: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:224:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:228:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:266:14: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:292:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:297:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:298:28: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:311:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:312:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./codegen2.h:77:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  utilc.c:33:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  utilc.c:35:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./genModelVars.h:121:32: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./genModelVars.h:146:31: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  :43:42: warning: SEXP generateModelVars();a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  genModelVars.c:5:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:560:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:561:11: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:562:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./codegen2.h:290:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./genModelVars.h:27:31: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./genModelVars.h:73:40: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./genModelVars.h:340:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  : warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  lsoda.c:903:38: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  tran.c:104:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  tran.c:114:11: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  tran.c:244:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  tran.c:292:11: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  tran.c:415:37: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  tran.c:551:39: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  tran.c:618:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  tran.c:629:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./parseSyntaxErrors.h:35:42: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./parseSyntaxErrors.h:290:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  tran.c:650:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  rxData.cpp:1254:15: warning: anonymous non-C-compatible type given name for linkage purposes by typedef declaration; add a tag name here [-Wnon-c-typedef-for-linkage]
  rxData.cpp:2343:15: warning: anonymous non-C-compatible type given name for linkage purposes by typedef declaration; add a tag name here [-Wnon-c-typedef-for-linkage]
See ‘/data/gannet/ripley/R/packages/tests-clang/RxODE.Rcheck/00install.out’ for details.
* checking installed package size ... NOTE
  installed size is  9.0Mb
  sub-directories of 1Mb or more:
    libs   6.4Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [39s/40s] OK
* checking Rd files ... NOTE
checkRd: (-1) add.dosing.Rd:147: Escaped LaTeX specials: \&
checkRd: (-1) add.sampling.Rd:113: Escaped LaTeX specials: \&
checkRd: (-1) et.Rd:243: Escaped LaTeX specials: \&
checkRd: (-1) etRbind.Rd:146: Escaped LaTeX specials: \&
checkRd: (-1) etRep.Rd:164: Escaped LaTeX specials: \&
checkRd: (-1) etSeq.Rd:143: Escaped LaTeX specials: \&
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘spelling.R’
  Running ‘testthat.R’ [46s/42s]
 [46s/43s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/data/gannet/ripley/R/packages/tests-clang/RxODE.Rcheck/00check.log’
for details.


Time 5:45.85, 826.34 + 38.13