* using log directory ‘/data/gannet/ripley/R/packages/tests-OpenBLAS/worms.Rcheck’ * using R Under development (unstable) (2023-04-26 r84330) * using platform: x86_64-pc-linux-gnu (64-bit) * R was compiled by gcc-13 (GCC) 13.0.1 20230419 (prerelease) GNU Fortran (GCC) 13.0.1 20230419 (prerelease) * running under: Fedora Linux 36 (Workstation Edition) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘worms/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘worms’ version ‘0.2.2’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘worms’ can be installed ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... ERROR Running examples in ‘worms-Ex.R’ failed The error most likely occurred in: > ### Name: wormsbynames > ### Title: GET AphiaRecordsByNames > ### Aliases: wormsbynames > > ### ** Examples > > taxon_names <- c( "Westwodilla caecula" , "Abra alba", "Chaetozone cf. setosa", "Algae" ) > w <- wormsbynames(taxon_names) REQUESTING 4 ITEMS BY NAME from World Register of Marine Species (www.marinespecies.org), 26/04/2023 13:56:25 (CC-BY) chunk 1/1 Abra alba no match Chaetozone cf. setosa no match Algae no match Error in my_worms[[w_index]] <- r_parsed[[i]][[1]] : attempt to select more than one element in integerOneIndex Calls: wormsbynames Execution halted * checking PDF version of manual ... OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR See ‘/data/gannet/ripley/R/packages/tests-OpenBLAS/worms.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 0:33.93, 25.64 + 5.47