* using log directory ‘/data/gannet/ripley/R/packages/tests-OpenBLAS/rapbase.Rcheck’
* using R Under development (unstable) (2023-06-19 r84569)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-13 (GCC) 13.1.0
    GNU Fortran (GCC) 13.1.0
* running under: Fedora Linux 36 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘rapbase/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘rapbase’ version ‘1.24.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘rapbase’ can be installed ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [62s/62s]
 [62s/63s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(rapbase)
  > 
  > test_check("rapbase")
  /usr/bin/pandoc +RTS -K512m -RTS howWeDealWithPersonalData.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/21b4e070d4ed4d.html --lua-filter /data/gannet/ripley/R/test-dev/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/file21b4e01274b3b6 --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet/ripley/R/test-dev/rmarkdown/rmd/fragment/default.html --no-highlight 
  /usr/bin/pandoc +RTS -K512m -RTS autoReportGuide.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/21b4e07435322c.html --lua-filter /data/gannet/ripley/R/test-dev/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/file21b4e02e416a14 --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet/ripley/R/test-dev/rmarkdown/rmd/fragment/default.html --no-highlight --include-in-header /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/rmarkdown-str21b4e033d66d51.html 
  /usr/bin/pandoc +RTS -K512m -RTS autoReportGuide.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/21b4e028715a78.html --lua-filter /data/gannet/ripley/R/test-dev/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/file21b4e069dedbf8 --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet/ripley/R/test-dev/rmarkdown/rmd/fragment/default.html --no-highlight --include-in-header /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/rmarkdown-str21b4e057d79dec.html 
  /usr/bin/pandoc +RTS -K512m -RTS autoReportGuide.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/21b4e059f783d3.html --lua-filter /data/gannet/ripley/R/test-dev/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/file21b4e0360b65e9 --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet/ripley/R/test-dev/rmarkdown/rmd/fragment/default.html --no-highlight --include-in-header /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/rmarkdown-str21b4e01fcdc352.html 
  /usr/bin/pandoc +RTS -K512m -RTS autoReportGuide.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/21b4e03dd33a19.html --lua-filter /data/gannet/ripley/R/test-dev/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/file21b4e02d1dab4 --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet/ripley/R/test-dev/rmarkdown/rmd/fragment/default.html --no-highlight --include-in-header /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/rmarkdown-str21b4e07e8957e3.html 
  /usr/bin/pandoc +RTS -K512m -RTS autoReportGuide.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/21b4e0c538c4.html --lua-filter /data/gannet/ripley/R/test-dev/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/file21b4e01bf7dd83 --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet/ripley/R/test-dev/rmarkdown/rmd/fragment/default.html --no-highlight --include-in-header /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/rmarkdown-str21b4e04914d0b6.html 
  /usr/bin/pandoc +RTS -K512m -RTS autoReportGuide.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/21b4e07261cec4.html --lua-filter /data/gannet/ripley/R/test-dev/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/file21b4e079c400f1 --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet/ripley/R/test-dev/rmarkdown/rmd/fragment/default.html --no-highlight --include-in-header /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/rmarkdown-str21b4e028a7610d.html 
  /usr/bin/pandoc +RTS -K512m -RTS autoReportGuide.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/21b4e030692cbb.html --lua-filter /data/gannet/ripley/R/test-dev/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/file21b4e05f60e6ef --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet/ripley/R/test-dev/rmarkdown/rmd/fragment/default.html --no-highlight --include-in-header /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/rmarkdown-str21b4e0217667b3.html 
  /usr/bin/pandoc +RTS -K512m -RTS autoReportGuide.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/21b4e03317aba4.html --lua-filter /data/gannet/ripley/R/test-dev/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/file21b4e06ae054b9 --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet/ripley/R/test-dev/rmarkdown/rmd/fragment/default.html --no-highlight --include-in-header /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/rmarkdown-str21b4e076d2347e.html 
  /usr/bin/pandoc +RTS -K512m -RTS autoReportGuide.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/21b4e02108ac5b.html --lua-filter /data/gannet/ripley/R/test-dev/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/file21b4e022aa8bd0 --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet/ripley/R/test-dev/rmarkdown/rmd/fragment/default.html --no-highlight --include-in-header /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/rmarkdown-str21b4e06c1f53c6.html 
  /usr/bin/pandoc +RTS -K512m -RTS autoReportGuide.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/21b4e0b215e1.html --lua-filter /data/gannet/ripley/R/test-dev/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/file21b4e02bcc7e90 --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet/ripley/R/test-dev/rmarkdown/rmd/fragment/default.html --no-highlight --include-in-header /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/rmarkdown-str21b4e0657c5fed.html 
  /usr/bin/pandoc +RTS -K512m -RTS autoReportGuide.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/21b4e061d7a824.html --lua-filter /data/gannet/ripley/R/test-dev/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/file21b4e0266a16c1 --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet/ripley/R/test-dev/rmarkdown/rmd/fragment/default.html --no-highlight --include-in-header /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/rmarkdown-str21b4e079c5177e.html 
  /usr/bin/pandoc +RTS -K512m -RTS autoReportGuide.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/21b4e07c5eac13.html --lua-filter /data/gannet/ripley/R/test-dev/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/file21b4e0711a2374 --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet/ripley/R/test-dev/rmarkdown/rmd/fragment/default.html --no-highlight --include-in-header /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/rmarkdown-str21b4e040ee8af0.html 
  /usr/bin/pandoc +RTS -K512m -RTS autoReportGuide.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/21b4e040f9ea6a.html --lua-filter /data/gannet/ripley/R/test-dev/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/file21b4e0fa7a0cd --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet/ripley/R/test-dev/rmarkdown/rmd/fragment/default.html --no-highlight --include-in-header /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/rmarkdown-str21b4e0263118c5.html 
       [,1]
  /usr/bin/pandoc +RTS -K512m -RTS autoReportGuide.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/21b4e033469757.html --lua-filter /data/gannet/ripley/R/test-dev/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/file21b4e0e7672a4 --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet/ripley/R/test-dev/rmarkdown/rmd/fragment/default.html --no-highlight --include-in-header /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/rmarkdown-str21b4e04fb1981d.html 
  /usr/bin/pandoc +RTS -K512m -RTS autoReportGuide.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/21b4e03be6d5c4.html --lua-filter /data/gannet/ripley/R/test-dev/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/file21b4e06d811560 --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet/ripley/R/test-dev/rmarkdown/rmd/fragment/default.html --no-highlight --include-in-header /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/rmarkdown-str21b4e06b037108.html 
  /usr/bin/pandoc +RTS -K512m -RTS autoReportGuide.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/21b4e02b1849a9.html --lua-filter /data/gannet/ripley/R/test-dev/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/file21b4e077a3f365 --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet/ripley/R/test-dev/rmarkdown/rmd/fragment/default.html --no-highlight --include-in-header /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/rmarkdown-str21b4e0295edee8.html 
  /usr/bin/pandoc +RTS -K512m -RTS autoReportGuide.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/21b4e019a588f3.html --lua-filter /data/gannet/ripley/R/test-dev/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/file21b4e03ab884cf --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet/ripley/R/test-dev/rmarkdown/rmd/fragment/default.html --no-highlight --include-in-header /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/rmarkdown-str21b4e035e0585b.html 
  /usr/bin/pandoc +RTS -K512m -RTS autoReportGuide.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/21b4e01fe7ca44.html --lua-filter /data/gannet/ripley/R/test-dev/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/file21b4e04ccab148 --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet/ripley/R/test-dev/rmarkdown/rmd/fragment/default.html --no-highlight --include-in-header /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/rmarkdown-str21b4e019124ce0.html 
  /usr/bin/pandoc +RTS -K512m -RTS exportGuide.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/21b4e05a8406a0.html --lua-filter /data/gannet/ripley/R/test-dev/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/file21b4e0676550 --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet/ripley/R/test-dev/rmarkdown/rmd/fragment/default.html --no-highlight 
  /usr/bin/pandoc +RTS -K512m -RTS howWeDealWithPersonalData.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/21b4e055c94df2.html --lua-filter /data/gannet/ripley/R/test-dev/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/file21b4e07a50b2e5 --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet/ripley/R/test-dev/rmarkdown/rmd/fragment/default.html --no-highlight 
  /usr/bin/pandoc +RTS -K512m -RTS howWeDealWithPersonalData.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/21b4e04011da31.html --lua-filter /data/gannet/ripley/R/test-dev/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/file21b4e03ab2d566 --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet/ripley/R/test-dev/rmarkdown/rmd/fragment/default.html --no-highlight 
  /usr/bin/pandoc +RTS -K512m -RTS statsGuide.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/21b4e02f8c6676.html --lua-filter /data/gannet/ripley/R/test-dev/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/file21b4e045d488de --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet/ripley/R/test-dev/rmarkdown/rmd/fragment/default.html --no-highlight --include-in-header /tmp/Rtmp0Ym8D4/working_dir/RtmpvsUlAx/rmarkdown-str21b4e067590045.html 
  [ FAIL 1 | WARN 0 | SKIP 37 | PASS 247 ]
  
  ══ Skipped tests (37) ══════════════════════════════════════════════════════════
  • Possible lack of database infrastructure (35): 'test-auto-report-db.R:48:3',
    'test-auto-report-db.R:102:3', 'test-auto-report-db.R:107:3',
    'test-auto-report-db.R:112:3', 'test-auto-report-db.R:117:3',
    'test-dbConnection.R:35:3', 'test-dbConnection.R:96:3',
    'test-dbConnection.R:107:3', 'test-dbConnection.R:113:3',
    'test-dbConnection.R:122:3', 'test-dbConnection.R:130:3',
    'test-dbConnection.R:138:3', 'test-log.R:142:3', 'test-log.R:163:3',
    'test-log.R:168:3', 'test-log.R:184:3', 'test-log.R:189:3',
    'test-log.R:198:3', 'test-log.R:205:3', 'test-moduleExport.R:40:3',
    'test-moduleExport.R:99:3', 'test-moduleExport.R:115:5',
    'test-moduleExport.R:130:5', 'test-stagingData.R:130:3',
    'test-stagingData.R:170:3', 'test-stagingData.R:176:3',
    'test-stagingData.R:185:3', 'test-stagingData.R:193:3',
    'test-stagingData.R:199:3', 'test-stagingData.R:206:3',
    'test-stagingData.R:211:3', 'test-stagingData.R:216:3',
    'test-stagingData.R:221:3', 'test-stagingData.R:226:3',
    'test-stagingData.R:232:3'
  • Test skipped Windblows. Please fix later! (1): 'test-renderRmd.R:15:3'
  • cran autocheck false positive on debian (1):
    'test-auto-report-functions.R:220:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-auto-report-functions.R:213:3'): a report sceduled for today with startDate in future is not run ──
  `runAutoReport(dryRun = TRUE)` produced messages.
  
  [ FAIL 1 | WARN 0 | SKIP 37 | PASS 247 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/gannet/ripley/R/packages/tests-OpenBLAS/rapbase.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 1:46.42, 95.61 + 9.83