* using log directory ‘/data/gannet/ripley/R/packages/tests-OpenBLAS/HostSwitch.Rcheck’ * using R Under development (unstable) (2023-08-28 r85029) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc-13 (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Fedora Linux 36 (Workstation Edition) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘HostSwitch/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘HostSwitch’ version ‘0.1.3’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘HostSwitch’ can be installed ... [12s/63s] OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [3s/11s] OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... [3s/13s] OK * checking loading without being on the library search path ... [3s/11s] OK * checking whether startup messages can be suppressed ... [3s/11s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [16s/66s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [20s/61s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘tinytest.R’ [4s/22s] [5s/23s] ERROR Running the tests in ‘tests/tinytest.R’ failed. Complete output: > > if ( requireNamespace("tinytest", quietly=TRUE) ){ + tinytest::test_package("HostSwitch") + } Welcome to the HostSwitch simulation package, v.0.1.3. For overview type vignette('HostSwitch', package='HostSwitch'). Note: For an interactive plot, see ?shinyHostSwitch for details. test_HostSwitch.R............. 0 tests test_HostSwitch.R............. 0 tests test_HostSwitch.R............. 0 tests test_HostSwitch.R............. 0 tests test_HostSwitch.R............. 1 tests 1 fails test_HostSwitch.R............. 2 tests 1 fails test_HostSwitch.R............. 3 tests 1 fails test_HostSwitch.R............. 4 tests 1 fails test_HostSwitch.R............. 4 tests 1 fails test_HostSwitch.R............. 4 tests 1 fails test_HostSwitch.R............. 4 tests 1 fails test_HostSwitch.R............. 5 tests 1 fails test_HostSwitch.R............. 5 tests 1 fails test_HostSwitch.R............. 5 tests 1 fails test_HostSwitch.R............. 6 tests 1 fails test_HostSwitch.R............. 6 tests 1 fails test_HostSwitch.R............. 6 tests 1 fails test_HostSwitch.R............. 6 tests 1 fails test_HostSwitch.R............. 6 tests 1 fails test_HostSwitch.R............. 6 tests 1 fails test_HostSwitch.R............. 7 tests 1 fails test_HostSwitch.R............. 7 tests 1 fails test_HostSwitch.R............. 7 tests 1 fails test_HostSwitch.R............. 8 tests 1 fails test_HostSwitch.R............. 8 tests 1 fails test_HostSwitch.R............. 9 tests 1 fails test_HostSwitch.R............. 9 tests 1 fails test_HostSwitch.R............. 9 tests 1 fails test_HostSwitch.R............. 9 tests 1 fails test_HostSwitch.R............. 10 tests 1 fails test_HostSwitch.R............. 10 tests 1 fails test_HostSwitch.R............. 10 tests 1 fails test_HostSwitch.R............. 11 tests 1 fails 1.5s test_plots.R.................. 0 tests test_plots.R.................. 1 tests OK test_plots.R.................. 2 tests OK 2.1s test_testHostSwitch.R......... 0 tests test_testHostSwitch.R......... 1 tests OK test_testHostSwitch.R......... 1 tests OK test_testHostSwitch.R......... 1 tests OK test_testHostSwitch.R......... 1 tests OK test_testHostSwitch.R......... 1 tests OK test_testHostSwitch.R......... 1 tests OK test_testHostSwitch.R......... 2 tests OK 5.4s ----- FAILED[data]: test_HostSwitch.R<52--55> call| expect_true(sum(is.na(NA_in_pInd_jump_sim)) > 1) diff| Expected TRUE, got FALSE Error: 1 out of 15 tests failed Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking re-building of vignette outputs ... [25s/106s] OK * checking PDF version of manual ... [9s/40s] OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR See ‘/data/gannet/ripley/R/packages/tests-OpenBLAS/HostSwitch.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 10:02.63, 129.22 + 15.45