* using log directory ‘/data/gannet/ripley/R/packages/tests-ATLAS/crosstalkr.Rcheck’
* using R Under development (unstable) (2024-03-20 r86155)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-13 (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Fedora Linux 36 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘crosstalkr/DESCRIPTION’ ... OK
* this is package ‘crosstalkr’ version ‘1.0.4’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘crosstalkr’ can be installed ... [37s/63s] OK
* used C++ compiler: ‘g++-13 (GCC) 13.2.0’
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [10s/25s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [6s/14s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [78s/201s]
 [79s/202s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(crosstalkr)
  > 
  > test_check("crosstalkr")
  [ FAIL 1 | WARN 2 | SKIP 12 | PASS 85 ]
  
  ══ Skipped tests (12) ══════════════════════════════════════════════════════════
  • On CRAN (6): 'test-filter.R:33:3', 'test-ppi_ingest.R:18:3',
    'test-ppi_ingest.R:26:3', 'test-ppi_ingest.R:32:3', 'test-utils.R:11:3',
    'test-utils.R:17:3'
  • relies on installed data (2): 'test-utils.R:52:3', 'test-utils.R:59:3'
  • relies on system file (2): 'test-calc_np.R:1:1',
    'test-node_suppression.R:1:1'
  • skipping due to long download times (2): 'test-ppi_ingest.R:3:3',
    'test-ppi_ingest.R:9:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-create_null.R:41:3'): Matched seeds are the same length as input seeds ──
  Error in `sample.int(length(x), size, replace, prob)`: invalid first argument
  Backtrace:
      ▆
   1. ├─testthat::expect_equal(...) at test-create_null.R:41:3
   2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
   4. └─crosstalkr:::match_seeds(g = g, seed_proteins = 50, n = 1)
   5.   └─base::sample(degree_all, size = num_seeds)
   6.     └─base::sample.int(length(x), size, replace, prob)
  
  [ FAIL 1 | WARN 2 | SKIP 12 | PASS 85 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [90s/228s] OK
* checking PDF version of manual ... [11s/31s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/gannet/ripley/R/packages/tests-ATLAS/crosstalkr.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 11:59.91, 276.71 + 19.02