* using log directory ‘/Users/ripley/R/packages/tests-devel/strm.Rcheck’
* using R Under development (unstable) (2022-07-21 r82611)
* using platform: aarch64-apple-darwin21.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘strm/DESCRIPTION’ ... OK
* this is package ‘strm’ version ‘0.1.3’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘strm’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘strm_intro.Rmd’ using knitr
Loading required package: spatialreg
Loading required package: spData
To access larger datasets in this package, install the spDataLarge
package with: `install.packages('spDataLarge',
repos='https://nowosad.github.io/drat/', type='source')`
Loading required package: Matrix
Loading required package: sf
Linking to GEOS 3.11.0, GDAL 3.5.1, PROJ 9.0.1; sf_use_s2() is TRUE

Attaching package: 'tidyr'

The following objects are masked from 'package:Matrix':

    expand, pack, unpack


Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Loading required package: sp
Please note that rgdal will be retired by the end of 2023,
plan transition to sf/stars/terra functions using GDAL and PROJ
at your earliest convenience.

rgdal: version: 1.5-32, (SVN revision 1176)
Geospatial Data Abstraction Library extensions to R successfully loaded
Loaded GDAL runtime: GDAL 3.5.1, released 2022/06/30
Path to GDAL shared files: /Users/ripley/R/Library/rgdal/gdal
 GDAL does not use iconv for recoding strings.
GDAL binary built with GEOS: TRUE 
Loaded PROJ runtime: Rel. 9.0.1, June 15th, 2022, [PJ_VERSION: 901]
Path to PROJ shared files: /Users/ripley/R/Library/rgdal/proj
PROJ CDN enabled: FALSE
Linking to sp version:1.5-0
To mute warnings of possible GDAL/OSR exportToProj4() degradation,
use options("rgdal_show_exportToProj4_warnings"="none") before loading sp or rgdal.

Attaching package: 'spdep'

The following objects are masked from 'package:spatialreg':

    get.ClusterOption, get.VerboseOption, get.ZeroPolicyOption,
    get.coresOption, get.mcOption, set.ClusterOption,
    set.VerboseOption, set.ZeroPolicyOption, set.coresOption,
    set.mcOption

rgeos version: 0.5-9, (SVN revision 684)
 GEOS runtime version: 3.11.0-CAPI-1.17.0 
 Please note that rgeos will be retired by the end of 2023,
plan transition to sf functions using GEOS at your earliest convenience.
 GEOS using OverlayNG
 Linking to sp version: 1.5-0 
 Polygon checking: TRUE 

Loading required package: Ecfun

Attaching package: 'Ecfun'

The following object is masked from 'package:base':

    sign


Attaching package: 'Ecdat'

The following object is masked from 'package:datasets':

    Orange

Quitting from lines 176-179 (strm_intro.Rmd) 
Error: processing vignette 'strm_intro.Rmd' failed with diagnostics:
empty geometries are not supported by sp classes: conversion failed
--- failed re-building ‘strm_intro.Rmd’

--- re-building ‘strm_withcensusdata.Rmd’ using knitr
Warning in strm(formula2, id = "NAME", data = wi_w.sf, listw = listw_w,  :
  Data is in wide format. strm assumes you include the temporally-lagged explanatory variables manually.
--- finished re-building ‘strm_withcensusdata.Rmd’

SUMMARY: processing the following file failed:
  ‘strm_intro.Rmd’

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/Users/ripley/R/packages/tests-devel/strm.Rcheck/00check.log’
for details.

       85.00 real        73.64 user         5.28 sys