* using log directory ‘/Users/ripley/R/packages/tests-devel/starticles.Rcheck’
* using R Under development (unstable) (2023-09-22 r85201)
* using platform: aarch64-apple-darwin22.6.0
* R was compiled by
    Apple clang version 15.0.0 (clang-1500.0.40.1)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.6
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘starticles/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘starticles’ version ‘0.1.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘starticles’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
  ‘bookdown’ ‘knitr’ ‘rmarkdown’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [24s/41s] ERROR
Running examples in ‘starticles-Ex.R’ failed
The error most likely occurred in:

> ### Name: starticles
> ### Title: A Generic, Publisher-Independent Template for Writing Scientific
> ###   Documents in 'rmarkdown'
> ### Aliases: starticles
> ### Keywords: package
> 
> ### ** Examples
> 
> # Use a temporary directory ----------------------------
> owd = getwd()
> td = tempfile()
> dir.create(td,recursive=TRUE)
> setwd(td)
> print(td) # To see where files will be
[1] "/var/folders/pk/n4bndnt1287ctrd_ftthnnnr0000gp/T//Rtmp9AcV0Y/working_dir/Rtmp7eTZDi/filea02b55e409d9"
> 
> # Create the draft template ----------------------------
> rmarkdown::draft("MYARTICLENAME.Rmd","generic_article","starticles",edit=FALSE)
> 
> # Render PDF document ----------------------------------
> # Fails for me when run using RStudio "Run examples" link in help,
> # but not when sourced from command line.
> 
> # Requires recent version of pandoc (provided by RStudio)
> if (rmarkdown::pandoc_available(version="2.17"))
+   rmarkdown::render("MYARTICLENAME/MYARTICLENAME.Rmd",
+                     envir=new.env(parent = globalenv()))


processing file: MYARTICLENAME.Rmd
output file: MYARTICLENAME.knit.md

/opt/R/arm64/bin/pandoc +RTS -K512m -RTS MYARTICLENAME.knit.md --to latex --from markdown+autolink_bare_uris+tex_math_single_backslash --output MYARTICLENAME.tex --lua-filter /Users/ripley/R/Library/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /Users/ripley/R/Library/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /Users/ripley/R/Library/rmarkdown/rmarkdown/lua/latex-div.lua --embed-resources --standalone --template generic_article_template.tex --number-sections --highlight-style tango --pdf-engine pdflatex --wrap preserve --variable tables=yes --standalone -Mhas-frontmatter=false --citeproc 
! Undefined control sequence.
l.364 ...ticle at the end of a sentence (\citeproc
                                                  {ref-horvath2018dna}{Horva...

Error: LaTeX failed to compile MYARTICLENAME.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See MYARTICLENAME.log for more info.
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘test.starticles.R’
 ERROR
Running the tests in ‘tests/test.starticles.R’ failed.
Complete output:
  > # Use a temporary directory ----------------------------
  > owd = getwd()
  > td = tempfile()
  > dir.create(td,recursive=TRUE)
  > setwd(td)
  > print(td) # To see where files will be
  [1] "/var/folders/pk/n4bndnt1287ctrd_ftthnnnr0000gp/T//Rtmp9AcV0Y/working_dir/RtmpRJesm2/fileb5293ab49727"
  > 
  > # Create the draft template ----------------------------
  > rmarkdown::draft("MYARTICLENAME.Rmd","generic_article","starticles",edit=FALSE)
  > 
  > # Render PDF document ----------------------------------
  > # Fails for me when run using RStudio "Run examples" link in help,
  > # but not when sourced from command line.
  > 
  > # Requires recent version of pandoc (provided by RStudio)
  > if (rmarkdown::pandoc_available(version="2.17"))
  +   rmarkdown::render("MYARTICLENAME/MYARTICLENAME.Rmd",
  +                     envir=new.env(parent = globalenv()))
  
  
  processing file: MYARTICLENAME.Rmd
  output file: MYARTICLENAME.knit.md
  
  /opt/R/arm64/bin/pandoc +RTS -K512m -RTS MYARTICLENAME.knit.md --to latex --from markdown+autolink_bare_uris+tex_math_single_backslash --output MYARTICLENAME.tex --lua-filter /Users/ripley/R/Library/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /Users/ripley/R/Library/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /Users/ripley/R/Library/rmarkdown/rmarkdown/lua/latex-div.lua --embed-resources --standalone --template generic_article_template.tex --number-sections --highlight-style tango --pdf-engine pdflatex --wrap preserve --variable tables=yes --standalone -Mhas-frontmatter=false --citeproc 
  ! Undefined control sequence.
  l.364 ...ticle at the end of a sentence (\citeproc
                                                    {ref-horvath2018dna}{Horva...
  
  Error: LaTeX failed to compile MYARTICLENAME.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See MYARTICLENAME.log for more info.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 2 ERRORs, 1 NOTE
See
  ‘/Users/ripley/R/packages/tests-devel/starticles.Rcheck/00check.log’
for details.

       60.87 real        26.51 user        14.27 sys