* using log directory ‘/Users/ripley/R/packages/tests-devel/qMRI.Rcheck’ * using R Under development (unstable) (2024-03-15 r86143) * using platform: aarch64-apple-darwin23.4.0 * R was compiled by Apple clang version 15.0.0 (clang-1500.3.9.4) GNU Fortran (GCC) 12.2.0 * running under: macOS Sonoma 14.4 * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘qMRI/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘qMRI’ version ‘1.2.7’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘qMRI’ can be installed ... OK * used C compiler: ‘Apple clang version 15.0.0 (clang-1500.3.9.4)’ * used Fortran compiler: ‘GNU Fortran (GCC) 12.2.0’ * used SDK: ‘MacOSX14.4.sdk’ * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) estimateIRfluid.Rd:7: Lost braces; missing escapes or markup? 7 | The Inversion Recovery MRI signal in voxel containing only CSF follows is modeled as $S_{InvTime} = par[1] * abs( 1 - 2 * exp(-InvTime*par[2]) )$ dependings on two parameters. These parameters are assumed to be tissue (and scanner) dependent. | ^ checkRd: (-1) estimateIRfluid.Rd:41: Lost braces; missing escapes or markup? 41 | The Inversion Recovery MRI signal in voxel containing only CSF follows is modeled as $S_{InvTime} = par[1] * abs( 1 - 2 * exp(-InvTime*par[2]) )$ dependings on two parameters. These parameters are assumed to be tissue (and scanner) dependent. | ^ checkRd: (-1) extract-methods.Rd:85: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:86: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:87: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:88: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:89: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:90: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:91: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:92: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:93: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:94: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:95: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:96: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:104: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:105: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:106: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:107: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:108: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:109: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:110: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:111: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:112: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:113: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:114: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:115: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:116: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:117: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:118: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:119: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:120: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:121: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:122: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:123: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:131: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:132: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:133: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:134: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:135: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:136: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:137: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:138: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:139: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:140: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:141: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:142: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:143: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:144: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:145: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:146: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:147: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:148: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:149: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:150: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:151: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:152: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:153: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:161: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:162: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:163: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:164: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:165: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:166: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:167: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:168: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:169: Lost braces in \itemize; meant \describe ? checkRd: (-1) extract-methods.Rd:170: Lost braces in \itemize; meant \describe ? * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for GNU extensions in Makefiles ... OK * checking include directives in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking usage of KIND in Fortran files ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘qMRI-test.R’ [10s/11s] Comparing ‘qMRI-test.Rout’ to ‘qMRI-test.Rout.save’ ...87c87 < 0.768893 17.87941 0.8579759 5682.832 --- > 0.7754808 17.91227 0.8803859 5695.786 89c89 < 0.1163028 6.352211 0.2703803 564.6314 --- > 0.0952147 5.612629 0.2369349 504.4215 [11s/11s] OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [29s/30s] OK * checking PDF version of manual ... OK * checking HTML version of manual ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 NOTE See ‘/Users/ripley/R/packages/tests-devel/qMRI.Rcheck/00check.log’ for details. 77.04 real 66.98 user 5.20 sys