* using log directory ‘/Users/ripley/R/packages/tests-devel/panelPomp.Rcheck’
* using R Under development (unstable) (2024-04-27 r86487)
* using platform: aarch64-apple-darwin23.4.0
* R was compiled by
    Apple clang version 15.0.0 (clang-1500.3.9.4)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Sonoma 14.4.1
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘panelPomp/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘panelPomp’ version ‘1.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘panelPomp’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘_options.R’
  Comparing ‘_options.Rout’ to ‘_options.Rout.save’ ... OK
  Running ‘aaa.R’
  Comparing ‘aaa.Rout’ to ‘aaa.Rout.save’ ... OK
  Running ‘contacts.R’
  Comparing ‘contacts.Rout’ to ‘contacts.Rout.save’ ...14c14
< name [,1] [,2] [,3] [,4]
---
> variable [,1] [,2] [,3] [,4]
17c17
< name [,1] [,2] [,3] [,4]
---
> variable [,1] [,2] [,3] [,4]
  Running ‘get_col_row.R’
  Comparing ‘get_col_row.Rout’ to ‘get_col_row.Rout.save’ ... OK
  Running ‘mif2.R’
  Comparing ‘mif2.Rout’ to ‘mif2.Rout.save’ ... OK
  Running ‘mif2_intern.R’
  Comparing ‘mif2_intern.Rout’ to ‘mif2_intern.Rout.save’ ... OK
  Running ‘mif2_methods.R’
  Comparing ‘mif2_methods.Rout’ to ‘mif2_methods.Rout.save’ ... OK
  Running ‘panelGompertz.R’
  Comparing ‘panelGompertz.Rout’ to ‘panelGompertz.Rout.save’ ...14c14
< name     [,1]      [,2]     [,3]      [,4]     [,5]
---
> variable     [,1]      [,2]     [,3]      [,4]     [,5]
17c17
< name      [,1]     [,2]     [,3]    [,4]     [,5]
---
> variable      [,1]     [,2]     [,3]    [,4]     [,5]
  Running ‘panelGompertzLikelihood.R’
  Comparing ‘panelGompertzLikelihood.Rout’ to ‘panelGompertzLikelihood.Rout.save’ ... OK
  Running ‘panelPomp.R’
  Comparing ‘panelPomp.Rout’ to ‘panelPomp.Rout.save’ ... OK
  Running ‘panelPomp_methods.R’
  Comparing ‘panelPomp_methods.Rout’ to ‘panelPomp_methods.Rout.save’ ... OK
  Running ‘panelRandomWalk.R’
  Comparing ‘panelRandomWalk.Rout’ to ‘panelRandomWalk.Rout.save’ ...14c14
< name   [,1]     [,2]     [,3]     [,4]     [,5]
---
> variable   [,1]     [,2]     [,3]     [,4]     [,5]
17c17
< name    [,1]       [,2]      [,3]      [,4]      [,5]
---
> variable    [,1]       [,2]      [,3]      [,4]      [,5]
  Running ‘panel_loglik.R’
  Comparing ‘panel_loglik.Rout’ to ‘panel_loglik.Rout.save’ ... OK
  Running ‘params.R’
  Comparing ‘params.Rout’ to ‘params.Rout.save’ ... OK
  Running ‘pfilter.R’
  Comparing ‘pfilter.Rout’ to ‘pfilter.Rout.save’ ... OK
  Running ‘pfilter_methods.R’
  Comparing ‘pfilter_methods.Rout’ to ‘pfilter_methods.Rout.save’ ... OK
  Running ‘plot.R’
  Comparing ‘plot.Rout’ to ‘plot.Rout.save’ ... OK
  Running ‘print-results.R’
  Comparing ‘print-results.Rout’ to ‘print-results.Rout.save’ ...26c26
< name       [,1]      [,2]      [,3]      [,4]      [,5]      [,6]
---
> variable       [,1]      [,2]      [,3]      [,4]      [,5]      [,6]
31c31
< name     [,1]     [,2]     [,3]     [,4]     [,5]      [,6]
---
> variable     [,1]     [,2]     [,3]     [,4]     [,5]      [,6]
  Running ‘seeded-results.R’
  Comparing ‘seeded-results.Rout’ to ‘seeded-results.Rout.save’ ... OK
  Running ‘simulate.R’
  Comparing ‘simulate.Rout’ to ‘simulate.Rout.save’ ...11c11
< name     [,1]     [,2]     [,3]     [,4]      [,5]
---
> variable     [,1]     [,2]     [,3]     [,4]      [,5]
 [16s/19s] OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: OK

       42.16 real        29.18 user         7.43 sys