* using log directory ‘/Users/ripley/R/packages/tests-devel/mssm.Rcheck’
* using R Under development (unstable) (2024-01-08 r85794)
* using platform: aarch64-apple-darwin23.2.0
* R was compiled by
    Apple clang version 15.0.0 (clang-1500.1.0.2.5)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Sonoma 14.2.1
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘mssm/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘mssm’ version ‘0.1.6’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘mssm’ can be installed ... [66s/69s] WARNING
Found the following significant warnings:
  PF.cpp:44:57: warning: format specifies type 'int' but the argument has type 'long' [-Wformat]
  laplace.cpp:519:65: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
  laplace.cpp:560:17: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
  laplace.cpp:560:27: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
  laplace.cpp:628:38: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
  laplace.cpp:631:17: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
  problem_data.cpp:60:27: warning: format specifies type 'int' but the argument has type 'long' [-Wformat]
See ‘/Users/ripley/R/packages/tests-devel/mssm.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
* used SDK: ‘MacOSX14.2.sdk’
* checking C++ specification ... NOTE
  Specified C++11: please drop specification unless essential
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(mssm)
  > 
  > options(testthat.summary.max_reports = 1000L)
  > test_check("mssm", reporter = "summary")
  cpp: 
  C++: 1
  gets-old-FSKA: 
  Test versus old results for kernel methods: .......
  gets-old-mssm: 
  Test versus old results for 'mssm' methods: .............................S......................S......................S......................S......................S......................S......................S......................S......................S....
  man-pages: 
  Testing manual page results: S
  misc: 
  Testing miscellaneous functions: ....................................................
  sample-methods: 
  Testing sample methods: ....
  
  ══ Skipped ═════════════════════════════════════════════════════════════════════
  1. get the same with 'poisson_log' ('test-gets-old-mssm.R:217:5') - Reason: On CRAN
  
  2. get the same with 'poisson_sqrt' ('test-gets-old-mssm.R:229:5') - Reason: On CRAN
  
  3. get the same with 'binomial_logit' ('test-gets-old-mssm.R:240:5') - Reason: On CRAN
  
  4. get the same with 'binomial_cloglog' ('test-gets-old-mssm.R:252:5') - Reason: On CRAN
  
  5. get the same with 'binomial_probit' ('test-gets-old-mssm.R:265:5') - Reason: On CRAN
  
  6. get the same with 'Gamma_log' ('test-gets-old-mssm.R:277:5') - Reason: On CRAN
  
  7. get the same with 'gaussian_identity' ('test-gets-old-mssm.R:287:5') - Reason: On CRAN
  
  8. get the same with 'gaussian_log' ('test-gets-old-mssm.R:298:5') - Reason: On CRAN
  
  9. get the same with 'gaussian_inverse' ('test-gets-old-mssm.R:310:5') - Reason: On CRAN
  
  10. (code run outside of `test_that()`) ('test-man-pages.R:4:3') - Reason: On CRAN
  
  ══ Failed ══════════════════════════════════════════════════════════════════════
  ── 1. Failure ('test-cpp.R:3:5'): Catch unit tests pass ────────────────────────
  C++ unit tests:
  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   is a Catch v1.9.6 host application.
  Run with -? for options
  
  -------------------------------------------------------------------------------
  Test sym_band_mat | test-utils.cpp
    work with equal 'dim_dia' and 'dim_off'
  -------------------------------------------------------------------------------
  test-utils.cpp:400
  ...............................................................................
  
  test-utils.cpp:384: FAILED:
    CATCH_CHECK( is_all_equal(dense, dense_out) )
  with expansion:
    false
  
  test-utils.cpp:384: FAILED:
    CATCH_CHECK( is_all_equal(dense, dense_out) )
  with expansion:
    false
  
  test-utils.cpp:384: FAILED:
    CATCH_CHECK( is_all_equal(dense, dense_out) )
  with expansion:
    false
  
  -------------------------------------------------------------------------------
  Test sym_band_mat | test-utils.cpp
    work with unequal 'dim_dia' and 'dim_off'
  -------------------------------------------------------------------------------
  test-utils.cpp:411
  ...............................................................................
  
  test-utils.cpp:384: FAILED:
    CATCH_CHECK( is_all_equal(dense, dense_out) )
  with expansion:
    false
  
  test-utils.cpp:384: FAILED:
    CATCH_CHECK( is_all_equal(dense, dense_out) )
  with expansion:
    false
  
  test-utils.cpp:384: FAILED:
    CATCH_CHECK( is_all_equal(dense, dense_out) )
  with expansion:
    false
  
  ===============================================================================
  test cases:  12 |  11 passed | 1 failed
  assertions: 541 | 535 passed | 6 failed
  
  
  ══ DONE ════════════════════════════════════════════════════════════════════════
  Error: Test failures
  Execution halted
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR, 1 WARNING, 1 NOTE
See
  ‘/Users/ripley/R/packages/tests-devel/mssm.Rcheck/00check.log’
for details.

       88.85 real        76.72 user         7.51 sys