* using log directory ‘/Users/ripley/R/packages/tests-devel/lpjmlkit.Rcheck’
* using R Under development (unstable) (2023-03-29 r84124)
* using platform: aarch64-apple-darwin22.4.0 (64-bit)
* R was compiled by
    Apple clang version 14.0.3 (clang-1403.0.22.14.1)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.3
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘lpjmlkit/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘lpjmlkit’ version ‘1.0.11’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘lpjmlkit’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(lpjmlkit)
  
  Attaching package: 'lpjmlkit'
  
  The following object is masked from 'package:base':
  
      transform
  
  > 
  > test_check("lpjmlkit")
  [ FAIL 2 | WARN 107 | SKIP 0 | PASS 462 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-write_config.R:292:3'): write correct config with common list syntax ──
  Error: parse error: premature EOF
                                         
                       (right here) ------^
  
  Backtrace:
       ▆
    1. ├─lpjmlkit:::write_single_config(...) at test-write_config.R:292:2
    2. │ ├─... %>% ...
    3. │ └─lpjmlkit:::parse_config(...)
    4. │   └─... %>% jsonlite::parse_json(simplify = FALSE)
    5. ├─lpjmlkit:::mutate_config_param(...)
    6. ├─lpjmlkit:::mutate_config_output(...)
    7. └─jsonlite::parse_json(., simplify = FALSE)
    8.   └─jsonlite:::parse_and_simplify(...)
    9.     └─jsonlite:::parseJSON(txt, bigint_as_char)
   10.       └─jsonlite:::parse_string(txt, bigint_as_char)
  ── Error ('test-write_config.R:323:3'): include non output defined outputvars ──
  Error: parse error: premature EOF
                                         
                       (right here) ------^
  
  Backtrace:
       ▆
    1. ├─lpjmlkit:::write_single_config(...) at test-write_config.R:323:2
    2. │ ├─... %>% ...
    3. │ └─lpjmlkit:::parse_config(...)
    4. │   └─... %>% jsonlite::parse_json(simplify = FALSE)
    5. ├─lpjmlkit:::mutate_config_param(...)
    6. ├─lpjmlkit:::mutate_config_output(...)
    7. └─jsonlite::parse_json(., simplify = FALSE)
    8.   └─jsonlite:::parse_and_simplify(...)
    9.     └─jsonlite:::parseJSON(txt, bigint_as_char)
   10.       └─jsonlite:::parse_string(txt, bigint_as_char)
  
  [ FAIL 2 | WARN 107 | SKIP 0 | PASS 462 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/Users/ripley/R/packages/tests-devel/lpjmlkit.Rcheck/00check.log’
for details.

       30.13 real        23.85 user         4.80 sys