* installing *source* package ‘lavacreg’ ...
** package ‘lavacreg’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.3.9.4)’
using SDK: ‘MacOSX14.4.sdk’
clang++ -mmacos-version-min=14.3 -std=gnu++17 -I"/Users/ripley/R/R-devel/include" -DNDEBUG  -I'/Users/ripley/R/Library/Rcpp/include' -I'/Users/ripley/R/Library/RcppArmadillo/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/armadillo:144:
/Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo/rng/Alt_R_RNG.h:75:12: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wfloat-conversion]
    return ::Rf_runif(0, RAND_MAX);  //std::rand();
    ~~~~~~ ^~~~~~~~~~~~~~~~~~~~~~~
In file included from RcppExports.cpp:4:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo.h:37:
/Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloSugar.h:45:17: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'typename storage_type<13>::type' (aka 'int') [-Wshorten-64-to-32]
        j[ie] = cp;
              ~ ^~
In file included from RcppExports.cpp:4:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/armadillo:144:
/Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo/rng/Alt_R_RNG.h:134:22: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wfloat-conversion]
            mem[i] = ::Rf_runif(0, RAND_MAX);
                   ~ ^~~~~~~~~~~~~~~~~~~~~~~
/Users/ripley/R/Library/RcppArmadillo/include/armadillo_bits/arma_rng.hpp:383:21: note: in instantiation of function template specialization 'arma::arma_rng_alt::randi_fill<int>' requested here
      arma_rng_alt::randi_fill(mem, N, a, b);
                    ^
/Users/ripley/R/Library/RcppArmadillo/include/armadillo_bits/fn_randi.hpp:149:27: note: in instantiation of member function 'arma::arma_rng::randi<int>::fill' requested here
  arma_rng::randi<sword>::fill(&out_val, uword(1), a, b);
                          ^
In file included from RcppExports.cpp:4:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:
In file included from /Users/ripley/R/Library/Rcpp/include/RcppCommon.h:167:
/Users/ripley/R/Library/Rcpp/include/Rcpp/internal/export.h:114:9: warning: implicit conversion loses integer precision: 'R_xlen_t' (aka 'long') to 'uword' (aka 'unsigned int') [-Wshorten-64-to-32]
                                res[i] =  start[i] ;
                                ~~~ ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/internal/export.h:132:4: note: in instantiation of function template specialization 'Rcpp::internal::export_indexing__impl<arma::Col<double>, double>' requested here
                        export_indexing__impl<T,value_type>(
                        ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/internal/export.h:155:4: note: in instantiation of function template specialization 'Rcpp::internal::export_indexing__dispatch<arma::Col<double>, double>' requested here
                        export_indexing__dispatch<T,value_type>(
                        ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/internal/Exporter.h:64:35: note: in instantiation of function template specialization 'Rcpp::internal::export_indexing<arma::Col<double>, double>' requested here
                ::Rcpp::internal::export_indexing<T,value_type>( object, result ) ;
                                  ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/as.h:89:29: note: in instantiation of member function 'Rcpp::traits::IndexingExporter<arma::Col<double>, double>::get' requested here
            return exporter.get();
                            ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/as.h:152:26: note: in instantiation of function template specialization 'Rcpp::internal::as<arma::Col<double>>' requested here
        return internal::as<T>(x, typename traits::r_type_traits<T>::r_category());
                         ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/InputParameter.h:34:38: note: in instantiation of function template specialization 'Rcpp::as<arma::Col<double>>' requested here
        inline operator T() { return as<T>(x) ; }
                                     ^
RcppExports.cpp:40:57: note: in instantiation of member function 'Rcpp::InputParameter<arma::Col<double>>::operator Col' requested here
    rcpp_result_gen = Rcpp::wrap(compute_groupcond_logl(y, w, z, beta, Beta, gamma, Gamma, Omega, overdis, nu, Lambda, Theta, mu_eta, Sigma_eta, fixeta, ghweight, mu_z, Sigma_z, Sigma_z_lv, cores));
                                                        ^
In file included from RcppExports.cpp:4:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:
In file included from /Users/ripley/R/Library/Rcpp/include/RcppCommon.h:167:
/Users/ripley/R/Library/Rcpp/include/Rcpp/internal/export.h:114:9: warning: implicit conversion loses integer precision: 'R_xlen_t' (aka 'long') to 'uword' (aka 'unsigned int') [-Wshorten-64-to-32]
                                res[i] =  start[i] ;
                                ~~~ ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/internal/export.h:132:4: note: in instantiation of function template specialization 'Rcpp::internal::export_indexing__impl<arma::Mat<double>, double>' requested here
                        export_indexing__impl<T,value_type>(
                        ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/internal/export.h:155:4: note: in instantiation of function template specialization 'Rcpp::internal::export_indexing__dispatch<arma::Mat<double>, double>' requested here
                        export_indexing__dispatch<T,value_type>(
                        ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/internal/Exporter.h:86:35: note: in instantiation of function template specialization 'Rcpp::internal::export_indexing<arma::Mat<double>, double>' requested here
                ::Rcpp::internal::export_indexing<T,value_type>( object, result ) ;
                                  ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/as.h:89:29: note: in instantiation of member function 'Rcpp::traits::MatrixExporter<arma::Mat<double>, double>::get' requested here
            return exporter.get();
                            ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/as.h:152:26: note: in instantiation of function template specialization 'Rcpp::internal::as<arma::Mat<double>>' requested here
        return internal::as<T>(x, typename traits::r_type_traits<T>::r_category());
                         ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/InputParameter.h:34:38: note: in instantiation of function template specialization 'Rcpp::as<arma::Mat<double>>' requested here
        inline operator T() { return as<T>(x) ; }
                                     ^
RcppExports.cpp:40:60: note: in instantiation of member function 'Rcpp::InputParameter<arma::Mat<double>>::operator Mat' requested here
    rcpp_result_gen = Rcpp::wrap(compute_groupcond_logl(y, w, z, beta, Beta, gamma, Gamma, Omega, overdis, nu, Lambda, Theta, mu_eta, Sigma_eta, fixeta, ghweight, mu_z, Sigma_z, Sigma_z_lv, cores));
                                                           ^
5 warnings generated.
clang++ -mmacos-version-min=14.3 -std=gnu++17 -I"/Users/ripley/R/R-devel/include" -DNDEBUG  -I'/Users/ripley/R/Library/Rcpp/include' -I'/Users/ripley/R/Library/RcppArmadillo/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c compute_groupcond_logl.cpp -o compute_groupcond_logl.o
In file included from compute_groupcond_logl.cpp:3:
In file included from ./creg_header_funs.h:5:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/armadillo:144:
/Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo/rng/Alt_R_RNG.h:75:12: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wfloat-conversion]
    return ::Rf_runif(0, RAND_MAX);  //std::rand();
    ~~~~~~ ^~~~~~~~~~~~~~~~~~~~~~~
In file included from compute_groupcond_logl.cpp:3:
In file included from ./creg_header_funs.h:5:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo.h:37:
/Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloSugar.h:45:17: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'typename storage_type<13>::type' (aka 'int') [-Wshorten-64-to-32]
        j[ie] = cp;
              ~ ^~
compute_groupcond_logl.cpp:40:18: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wfloat-conversion]
  bool poisson = overdis ? 0 : 1;
                 ^~~~~~~ ~
In file included from compute_groupcond_logl.cpp:3:
In file included from ./creg_header_funs.h:5:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/armadillo:144:
/Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo/rng/Alt_R_RNG.h:134:22: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wfloat-conversion]
            mem[i] = ::Rf_runif(0, RAND_MAX);
                   ~ ^~~~~~~~~~~~~~~~~~~~~~~
/Users/ripley/R/Library/RcppArmadillo/include/armadillo_bits/arma_rng.hpp:383:21: note: in instantiation of function template specialization 'arma::arma_rng_alt::randi_fill<int>' requested here
      arma_rng_alt::randi_fill(mem, N, a, b);
                    ^
/Users/ripley/R/Library/RcppArmadillo/include/armadillo_bits/fn_randi.hpp:149:27: note: in instantiation of member function 'arma::arma_rng::randi<int>::fill' requested here
  arma_rng::randi<sword>::fill(&out_val, uword(1), a, b);
                          ^
4 warnings generated.
clang++ -mmacos-version-min=14.3 -std=gnu++17 -I"/Users/ripley/R/R-devel/include" -DNDEBUG  -I'/Users/ripley/R/Library/Rcpp/include' -I'/Users/ripley/R/Library/RcppArmadillo/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c creg_header_funs.cpp -o creg_header_funs.o
In file included from creg_header_funs.cpp:2:
In file included from ./creg_header_funs.h:5:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/armadillo:144:
/Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo/rng/Alt_R_RNG.h:75:12: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wfloat-conversion]
    return ::Rf_runif(0, RAND_MAX);  //std::rand();
    ~~~~~~ ^~~~~~~~~~~~~~~~~~~~~~~
In file included from creg_header_funs.cpp:2:
In file included from ./creg_header_funs.h:5:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo.h:37:
/Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloSugar.h:45:17: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'typename storage_type<13>::type' (aka 'int') [-Wshorten-64-to-32]
        j[ie] = cp;
              ~ ^~
In file included from creg_header_funs.cpp:2:
In file included from ./creg_header_funs.h:5:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/armadillo:144:
/Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo/rng/Alt_R_RNG.h:134:22: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wfloat-conversion]
            mem[i] = ::Rf_runif(0, RAND_MAX);
                   ~ ^~~~~~~~~~~~~~~~~~~~~~~
/Users/ripley/R/Library/RcppArmadillo/include/armadillo_bits/arma_rng.hpp:383:21: note: in instantiation of function template specialization 'arma::arma_rng_alt::randi_fill<int>' requested here
      arma_rng_alt::randi_fill(mem, N, a, b);
                    ^
/Users/ripley/R/Library/RcppArmadillo/include/armadillo_bits/fn_randi.hpp:149:27: note: in instantiation of member function 'arma::arma_rng::randi<int>::fill' requested here
  arma_rng::randi<sword>::fill(&out_val, uword(1), a, b);
                          ^
3 warnings generated.
clang++ -mmacos-version-min=14.3 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Users/ripley/R/R-devel/lib -L/opt/R/arm64/lib -o lavacreg.so RcppExports.o compute_groupcond_logl.o creg_header_funs.o -L/Users/ripley/R/R-devel/lib -lRlapack -L/Users/ripley/R/R-devel/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lemutls_w -lquadmath -L/Users/ripley/R/R-devel/lib -lR -Wl,-framework -Wl,CoreFoundation
installing to /Users/ripley/R/packages/tests-devel/lavacreg.Rcheck/00LOCK-lavacreg/00new/lavacreg/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (lavacreg)