* using log directory ‘/Users/ripley/R/packages/tests-devel/BayesVarSel.Rcheck’ * using R Under development (unstable) (2024-04-27 r86487) * using platform: aarch64-apple-darwin23.4.0 * R was compiled by Apple clang version 15.0.0 (clang-1500.3.9.4) GNU Fortran (GCC) 12.2.0 * running under: macOS Sonoma 14.4.1 * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘BayesVarSel/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘BayesVarSel’ version ‘2.2.5’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘BayesVarSel’ can be installed ... OK * used C compiler: ‘Apple clang version 15.0.0 (clang-1500.3.9.4)’ * used SDK: ‘MacOSX14.4.sdk’ * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... NOTE Note: found 385 marked UTF-8 strings * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking examples ...sh: line 1: 31191 Trace/BPT trap: 5 LANGUAGE=en _R_CHECK_INTERNALS2_=1 '/Users/ripley/R/R-devel/bin/R' --vanilla > 'BayesVarSel-Ex.Rout' 2>&1 < 'BayesVarSel-Ex.R' ERROR Running examples in ‘BayesVarSel-Ex.R’ failed The error most likely occurred in: > ### Name: BayesVarSel-package > ### Title: Bayes Factors, Model Choice And Variable Selection In Linear > ### Models > ### Aliases: BayesVarSel-package BayesVarSel > ### Keywords: package > > ### ** Examples > > demo(BayesVarSel.Hald) demo(BayesVarSel.Hald) ---- ~~~~~~~~~~~~~~~~ > #read Hald data > data(Hald) > #run the main function: (in this small example we keep all models) > hald.Bvs<- Bvs(formula="y~x1+x2+x3+x4", data=Hald, n.keep=16) Info. . . . Most complex model has 5 covariates From those 1 is fixed and we should select from the remaining 4 x1, x2, x3, x4 The problem has a total of 16 competing models Of these, the 16 most probable (a posteriori) are kept Working on the problem...please wait. * checking PDF version of manual ... OK * checking HTML version of manual ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 1 NOTE See ‘/Users/ripley/R/packages/tests-devel/BayesVarSel.Rcheck/00check.log’ for details. 18.46 real 14.45 user 3.01 sys